Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00570 ATGGTTGACATGGTTGAGATTGTTCTGTTGGTGAATTTGGACAAGCACAAGAAGGTTCCAATGGAGGAAAAACCATTCCCTGCATGGTCATGGTCTGTTGAACAGTGTTTGAAAGAGTATGAAGTGAAACTGGACAAGGGTCTGAGTACTCATGAGGTTCAGAAGCGGCGCGAGAAGTATGGATGGAATGAGTTAGCAAAGGAGAAAGGGAAGCCCTTGTGGGAACTAGTGTTGGAACAATTTGATGACATGCTGGTGAAGATACTTTTGGCTGCAGCCTTCATATCGTTTCTTTTGGCTTACTTTCACGGAAGTGACTCAGGGAAGCCTGGATTTGATGCATATGTGGAGCCACTTGTGATCATCTTGATTTTGGTCCTTAATGCCATTGTTGGAGTTTGGCAAGAGAACAATGCTGAGAAGGCTCTTGAAGCCCTCAAAGAATTGCAATGTGAGTCTGGGAAAGTGTTAAGGGATGGCTATTTTGTGCCTGATTTGCCTGCTAGAGAGCTTCTTCCTGGTGATATTGTAGAGTTGCATGTTGGAGATAAGGTCCCCGCTGATATGAGAGTTGCGGCTTTGAAAACCTCAACATTGAGGGTTGAACAAAGTTCTTTAACAGGAGAAGCAATGCCAGTTCTCAAGGGGACAAATCCTGTTTTCTTGGAAGACTGTGAGTTGCAGGCTAAAGAAAACATGGTATTTGCTGGCACCACTGTTGTCAATGGGAGTTGTGTATGTATTGTTATCACCACAGGAATGGACACTGAAATTGGAAAGATACAGAAGCAGATACATGAGGCTTCTCAAGAGGACAGTGACACCCCTTTGAAGAAGAAGCTGGATGAGTTTGGTAACAGGCTTACCACTGCAATCGGTATAGTTTGTCTCATTGTTTGGGTTATCAACTACAAGAACTTCATTTCTTGGGATGTTGTCGATGGATGGCCCTCAAACGTAAAATTTTCATTCCAAAAGTGTACCTACTATTTCAAAATTGCCGTTGCCCTTGCAGTTGCTGCAATCCCTGAAGGCCTTCCTGCTGTTATCACAACTTGTTTAGCACTCGGTACACGGAAAATGGCCCAAAAGAATGCAATTGTGAGAAAGCTTCCTAGTGTGGAAACTTTGGGATGTACTACTGTGATATGTTCAGACAAAACTGGCACTTTGACAACAAATCAGATGGCTGTGACACAATTCTTTACTTTGGGGGGGAAAACCACTGCTTCTCGACTCATTAGTGTTGAAGGCACAACTTATGATCCCAAAGATGGGGGAATTGTTGATTGGGGATGCTATAACATGGATTCTAATTTGCAAGTCATGGCTGAAATATGTGCTGTTTGTAATGATGCTGGGATTTACTTCGATGGTCGCCTTTTTAGAGCCACAGGTTTGCCTACTGAAGCTGCTCTCGAAGTGTTGGTTGAAAAGATGGGAGTTCCAGATGTGAAGTCAAGGACCAAAACTCGTGATAATGCAGAGCTTGCTGCAAACAACTTGATGGATGTCAACACTGTGGTGAAGTTAGGATGTTGTGAGTGGTGGAATAAAAGATCCAAAAGGGTAGCTACGTTGGAGTTTGATCGCATTCGGAAGTCAATGAGTGTTATTGTTCGTGAACCAAATGGTCAAAATCGGCTTCTTGTCAAGGGTGCTGTTGAGAGTTTACTGGAGCGTAGTTCACACGTGCAACTTGCTGATGGATCTCTTGTTCCAATAGATAATCAATGTAGGGAACTACTTCTTCAAAGACTCCAGGAGATGAGTGGGAAGGGATTGCGTTGCTTGGGTTTTTCATATAAAGATGAATTAGGAGAATTTTCAGACTATTATGCTGACAATCATCCTGCTCACAAGAAGTTGCTTGATCCAACATACTATTCATCCATTGAAAGTGATCTAGTTTTTGTTGGCATTGTTGGCTTAAGAGATCCTCCTCGTGAGGAAGTTCACAAAGCAATTGAGGATTGTAAGGAAGCTGGCATAGGAGTTATGGTAATAACTGGAGATAATAAGTCAACAGCAGAGGCTATTTGTCGGGAAATCAAATTGTTCTCTAAAGATGAGGATCTCAAAGGGCAAAGTTTGACTGGTAAGGAATTCATCACTCTTCCTCATTCAGAACAAGTTAAAATATTGTTGAGACCTGGAGGCAAGGTTTTCTCTCGAGCTGAACCTAGACACAAGCAAGAAATTGTTAGACTACTGAAGGAAATGGGGGAGATCGTTGCAATGACTGGAGATGGTGTGAATGATGCACCTGCACTTAAGCTAGCCGACATAGGGATTGCTATGGGCATAACTGGGACAGAGGTTGCAAAAGAAGCATCAGATATGGTGCTTGCAGATGACAATTTTAGTACCATAGTTTCAGCTGTAGCTGAGGGTCGCTCTATTTATAATAACATGAAGTCATTCATAAGGTACATGATATCATCCAATGTTGGGGAAGTAATATCCATATTCTTGACAGCTGCTTTGGGGATCCCAGAATGCATGATACCAGTGCAACTTCTATGGGTAAATTTGGTTACTGATGGTCCACCTGCAACAGCTCTTGGTTTTAACCCTGCTGATGTTGATATCATGCAGAAGCCACCTCGCAGAAGTGATGATCCATTAATAAGTTCTTGGGTTCTTTTCCGTTATCTGGTAATTGGTTCCTATGTGGGACTAGCAACAGTTGGCATTTTTGTCTTGTGGTACACTCAAGCATCCTTTCTTGGCATCAATCTTGTGAGTGATGGTCACACAATTATAGAATTCTCCCAGCTTCGCAATTGGGGGGAGTGTCCCTCATGGTCTAATTTTACTGTTGCTCCATTTGATGTTGGAGGGGGTCGCTTGATCACCTTTTCAAATCCTTGTGACTATTTCTCAGTTGGCAAAGTAAAGGCCATGACTCTCTCTCTCTCAGTCTTGGTGGCAATTGAGATGTTTAACTCTTTGAATGCCCTCTCAGAAGATAATAGCTTGAGGAAACTACCACCTTGGAGGAACCCTTGGCTTTTGGTAGCCATGTCAATATCATTAGGACTCCATTGCCTCATACTCTACACCCCATTCCTTGCAGAAGTGTTTGGAGTCATTCCTCTTAGTTTTAATGAGTGGTTTATGGTCCTTTTAATATCAGCACCTGTTATTCTTATTGATGAGATTCTGAAGTTAATGGCGAGGAGTCAAAGGAGGTTGACAAAAGAGAAAGAAGCATGA 3219 0.425 MVDMVEIVLLVNLDKHKKVPMEEKPFPAWSWSVEQCLKEYEVKLDKGLSTHEVQKRREKYGWNELAKEKGKPLWELVLEQFDDMLVKILLAAAFISFLLAYFHGSDSGKPGFDAYVEPLVIILILVLNAIVGVWQENNAEKALEALKELQCESGKVLRDGYFVPDLPARELLPGDIVELHVGDKVPADMRVAALKTSTLRVEQSSLTGEAMPVLKGTNPVFLEDCELQAKENMVFAGTTVVNGSCVCIVITTGMDTEIGKIQKQIHEASQEDSDTPLKKKLDEFGNRLTTAIGIVCLIVWVINYKNFISWDVVDGWPSNVKFSFQKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMAVTQFFTLGGKTTASRLISVEGTTYDPKDGGIVDWGCYNMDSNLQVMAEICAVCNDAGIYFDGRLFRATGLPTEAALEVLVEKMGVPDVKSRTKTRDNAELAANNLMDVNTVVKLGCCEWWNKRSKRVATLEFDRIRKSMSVIVREPNGQNRLLVKGAVESLLERSSHVQLADGSLVPIDNQCRELLLQRLQEMSGKGLRCLGFSYKDELGEFSDYYADNHPAHKKLLDPTYYSSIESDLVFVGIVGLRDPPREEVHKAIEDCKEAGIGVMVITGDNKSTAEAICREIKLFSKDEDLKGQSLTGKEFITLPHSEQVKILLRPGGKVFSRAEPRHKQEIVRLLKEMGEIVAMTGDGVNDAPALKLADIGIAMGITGTEVAKEASDMVLADDNFSTIVSAVAEGRSIYNNMKSFIRYMISSNVGEVISIFLTAALGIPECMIPVQLLWVNLVTDGPPATALGFNPADVDIMQKPPRRSDDPLISSWVLFRYLVIGSYVGLATVGIFVLWYTQASFLGINLVSDGHTIIEFSQLRNWGECPSWSNFTVAPFDVGGGRLITFSNPCDYFSVGKVKAMTLSLSVLVAIEMFNSLNALSEDNSLRKLPPWRNPWLLVAMSISLGLHCLILYTPFLAEVFGVIPLSFNEWFMVLLISAPVILIDEILKLMARSQRRLTKEKEA 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00570 1072 CDD P-type_ATPase_SERCA 29 1061 - -
Phco1g00570 1072 PRINTS P-type cation-transporting ATPase superfamily signature 772 784 - -
Phco1g00570 1072 PRINTS P-type cation-transporting ATPase superfamily signature 662 672 - -
Phco1g00570 1072 PRINTS P-type cation-transporting ATPase superfamily signature 384 398 - -
Phco1g00570 1072 PRINTS P-type cation-transporting ATPase superfamily signature 640 651 - -
Phco1g00570 1072 PRINTS P-type cation-transporting ATPase superfamily signature 202 216 - -
Phco1g00570 1072 PRINTS P-type cation-transporting ATPase superfamily signature 748 767 - -
Phco1g00570 1072 Pfam Cation transporting ATPase, C-terminus 833 1058 IPR006068 -
Phco1g00570 1072 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 394 647 - -
Phco1g00570 1072 PRINTS Sodium/potassium-transporting ATPase signature 1001 1025 - -
Phco1g00570 1072 PRINTS Sodium/potassium-transporting ATPase signature 377 398 - -
Phco1g00570 1072 FunFam Calcium-transporting ATPase, putative 231 380 - -
Phco1g00570 1072 Gene3D - 394 647 IPR023299 GO:0000166
Phco1g00570 1072 Gene3D - 79 1061 - -
Phco1g00570 1072 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 391 644 IPR023299 GO:0000166
Phco1g00570 1072 FunFam Calcium-transporting P-type ATPase, putative 642 793 - -
Phco1g00570 1072 SFLD C1.7: P-type atpase like 365 800 - -
Phco1g00570 1072 SUPERFAMILY Calcium ATPase, transduction domain A 156 264 IPR008250 -
Phco1g00570 1072 ProSitePatterns E1-E2 ATPases phosphorylation site. 386 392 IPR018303 -
Phco1g00570 1072 Pfam haloacid dehalogenase-like hydrolase 381 762 - -
Phco1g00570 1072 PANTHER CALCIUM-TRANSPORTING ATPASE 33 1067 - -
Phco1g00570 1072 SUPERFAMILY Calcium ATPase, transmembrane domain M 27 1062 IPR023298 -
Phco1g00570 1072 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 812 1066 - -
Phco1g00570 1072 SUPERFAMILY HAD-like 372 793 IPR036412 -
Phco1g00570 1072 FunFam Calcium-transporting ATPase, putative 131 266 - -
Phco1g00570 1072 NCBIfam HAD-IC family P-type ATPase 721 832 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco1g00570 1072 NCBIfam HAD-IC family P-type ATPase 322 409 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco1g00570 1072 Gene3D - 381 793 IPR023214 -
Phco1g00570 1072 Pfam Cation transporter/ATPase, N-terminus 29 96 IPR004014 -
Phco1g00570 1072 Pfam E1-E2 ATPase 150 364 - -
Phco1g00570 1072 Gene3D - 46 268 - -
Phco1g00570 1072 SMART Cation_ATPase_N_a_2 27 101 IPR004014 -
Phco1g00570 1072 SFLD p-type atpase 365 800 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00570 Phco-Chr1 4855436 4860756 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00570 1 4855436 4860756 Phco1g00570 1 4855436 4860756 ECH