Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00568 ATGGCTCCTTCAGCTTTCTTGACCTCACGTTTACCTTCAGCTTTTGGTACAACATACTTAGTTCACTTGCAGGCATTTGGAATTGAATTGGAAGGAGTATGGAAGCATATCCATCAGAAGTTTTCGGAAATTTCTGCTACCCTTCCACCAACATTAGTGACCGTGTTATTGTTTCATGGGAAGGAAAAGGGTCTTATTTCCTTGCCTAAGTTGTGTTGCATGATGATGGTTTTAGATCTTTTATCTTCTGATGCTGCTGGAAATCTCATTTCTCAAACTTTAGAGATCATTTCTGAGTTTCTAGTTAATGTTAACGATGTTCTTGTGAAAAAGGATAGTTTTAAGGAACTTGGTGCTTACGTGGAAAGAATTAAGCCTATCTTAGAAGAGTTGAAGAAAGGAAAAGTGAGTGATTCTGAGTCATTCAACCAAGCCATTGAGACCATGAACAAAGAAATTAAAGATGCGAAGCTACTAGCTCTAGAGTGCAGCAAGAAGAGCAAGGTTTATCTGTTAATAAACTCCAGGTCCATTGCTAAGAAGTTAGAGGATCACTCAAAACGGCTGAGTTGGGCACTTAATCTTATTCCTTTAGCCACAACAGGTCTTTCTTCAGGAATTGTTGAAGATATTGAAAAACTATGTGACAGCATGCAGACATCTGGATTTAAGGCAGCTCTAGATGAAGAAGCGATTTTAGAGAAAATTTACTCAGGGATTAGGGAAAACAATGTTGATCGTTCCTATGCAAACAACTTGCTACTTCTCATTGCTGAGACTGTTGGGATTAGGAATGAGAGGTCAACAATAAAGTTGGAACTTGAAGAGTTTAAGAGTGAAATTGAAATGGCACGCGACAGGAAGGAGTTAGCTGAAGCTATGCAAATGGATCAAATCATTGCTTTGTTGGAAAGGGCTGATGCAGCTTCATCACCAAGGGACAAGGAACTCAAATACTTTGCCAAACGCCGATCTTTGGGTAGTCAAATATTGGAGCCTTTGCAGTCATTTTATTGCACCATCACCCAGGATGTTATGGTGGATCCTGTTGAAATTTCATCAGGACAGACATTTGAGAGAAGTGCCATAGAAAAGTGGTTTGCAGAAGGAAATAAATTGTGCCCCTTGACCTTGATTCCCCTAGACACATCAATTTTGAGACCTAACAAACAGTTGAAACAATCCATACAAGAGTGGAAGGATAGAAATATAATGATTACAATTGCTACATTGAAAGAGAAAATCCTGTCTGGGAATGATGAGGAAGTGCTGCTTGATCTGAAAATTCTTCAGAATTTGTGTGAAGAAAAAGAACAGCACAGGGAATGGGTTATTCTGGAGAATTACATCCCAACTCTCATCCAAATTCTATCAAGAAACCGTGATATAAAAAAACATTCTCTGATCATCCTTGGCATGCTGGCAAAGGATAGTGAAGAAGCTAAGGTAAAAATTTCAACTGCTGATGGTGCAATTGAATCAATTGTCCGGTCTCTTGGACGTAGTACAGAGGTAAGGAAGTTAGCAGTGGCGTTACTGCTTGAATTGTCCAAATATGATTTGGCACGAGAACACATTGGAAAAGTTCAAGGTTGCATACTACTATTGGTGACTATGTCTAGTGGAGATGACAATCAAGCTGCTAAAGATGCAACGGAGCTATTGGAGAATCTTTCATACTCTGATCAGAATGTTATACAGATGGCAAAAGCAAATTATTTCAAGCATTTATTGCAGCGTCTCTCCACAGGACCAGAAGATGTAAAGATGATTATGGCAAAAAATTTAGCAGAAATGGAGTTAACTGACCATAATAGAGAGTCCTTGTTTGATGGTGGTGTACTGGTTCCTCTTCTTCACATGTTCTCACAAAATGATCTTCTGGTGAAAGCAGAAGCTATTAAAGCTCTTAAAAATTTGTCCAATTCAAAGAAAAATGGACAGGAAATGATAAGACAGGGGGCTGCACGGCCGCTACTTAACCTCCTTTTCAACCAAAGCATACCCACTACAAGTTTGTGGGGAGATCTATCAACCATAATCGTGCAACTTGCTGCATCAACTATCTCTCAGGACGCCCAAACACCTGTTTTATTACTCGATTCTGATGATGATGTTTTCAATCTCTTCAATTTAGTTAGTGTCACAGAGCCTGTTGTGCAACAGAACATTATCCAGACCTTTTATGCCTTGTGTCAAACACCCTCGGCTTCGTGTATCAGAACCAAACTGAAAGAGTACCCAGCTGTTCCAAAATTGGTTGAACTGTGTGAGAATGAAAACCAAAACCTACGAGCAAGTGCTGTAAAGTTGTTTTCTTGCTTGGTGGAGAATTGTGATGAAGCCATCATACAGGAGAACGTGAACCAGAAATGCATCAATACTCTACTCAGGATTATAAAAACTTCATCTGATGAAGAGGAAATACTTTCTGCCATGGGAATGATATGCTATCTTCCAGAAATTGACCACATAACTCAATGGCTTCTGGATGGTGGGGCACTGCAAATCATTAAAAATTATGTCCAAGTTGGGAAAGACAGGGATCATCAAAGGAGAAATTTAGTTGAGAATGCCATTGGTGCCCTTGGTCGTTTTACTGTTCCAACAAACTTGGAATGGCAAAAAAGTGCAGCTGAAACAGGAATCATAACTGTTTTGGTGCAACTGCTTGAAAATGGAACCACCTTGACAAAACAACGCGTGGCGCAGTGTCTTGCTCAATTTTCTAGAAGTTCATTTACGCTGAGCAGGCCAATACCGAAGCGCAAAGGACTATGGTGCTTCTCAGCTCCTACTGATATTGGCTGCATGGTTCATGGAGGAATATGCTCAGTCAAATCATCATTTTGTCTTTTGGACGCCAACGCAGTGGCACCACTCACAAGGAATCTACGGGAATCTGATCCTGGAGTTTGTGAGGCTTCTTTGGATGCTCTTTTAACATTGATAGAAGATGAAAGACTGCAGAGTGGTAGTGCTGTGCTTGCTGAAGCAAATGCCATACCACTTATAATCAGATATCTTGGTTCCCCCTCCCCTGGCTTGCTGGAGAAGTCTCTAAATGCTTTGGAAAGGATTTTTCGGCTACCCGAATTCAAACAGATGTATGGAGCCTCAGCTCAAATGGCTCTAGTTGATTTGACTCAGAGGGGTAATGGTAGTGTTAGATCCACGTCAGCTAGAATATTGGTACATTTGAACGTGCTTCATGATCAATCTTCATTTTTCTAA 3234 0.4032 MAPSAFLTSRLPSAFGTTYLVHLQAFGIELEGVWKHIHQKFSEISATLPPTLVTVLLFHGKEKGLISLPKLCCMMMVLDLLSSDAAGNLISQTLEIISEFLVNVNDVLVKKDSFKELGAYVERIKPILEELKKGKVSDSESFNQAIETMNKEIKDAKLLALECSKKSKVYLLINSRSIAKKLEDHSKRLSWALNLIPLATTGLSSGIVEDIEKLCDSMQTSGFKAALDEEAILEKIYSGIRENNVDRSYANNLLLLIAETVGIRNERSTIKLELEEFKSEIEMARDRKELAEAMQMDQIIALLERADAASSPRDKELKYFAKRRSLGSQILEPLQSFYCTITQDVMVDPVEISSGQTFERSAIEKWFAEGNKLCPLTLIPLDTSILRPNKQLKQSIQEWKDRNIMITIATLKEKILSGNDEEVLLDLKILQNLCEEKEQHREWVILENYIPTLIQILSRNRDIKKHSLIILGMLAKDSEEAKVKISTADGAIESIVRSLGRSTEVRKLAVALLLELSKYDLAREHIGKVQGCILLLVTMSSGDDNQAAKDATELLENLSYSDQNVIQMAKANYFKHLLQRLSTGPEDVKMIMAKNLAEMELTDHNRESLFDGGVLVPLLHMFSQNDLLVKAEAIKALKNLSNSKKNGQEMIRQGAARPLLNLLFNQSIPTTSLWGDLSTIIVQLAASTISQDAQTPVLLLDSDDDVFNLFNLVSVTEPVVQQNIIQTFYALCQTPSASCIRTKLKEYPAVPKLVELCENENQNLRASAVKLFSCLVENCDEAIIQENVNQKCINTLLRIIKTSSDEEEILSAMGMICYLPEIDHITQWLLDGGALQIIKNYVQVGKDRDHQRRNLVENAIGALGRFTVPTNLEWQKSAAETGIITVLVQLLENGTTLTKQRVAQCLAQFSRSSFTLSRPIPKRKGLWCFSAPTDIGCMVHGGICSVKSSFCLLDANAVAPLTRNLRESDPGVCEASLDALLTLIEDERLQSGSAVLAEANAIPLIIRYLGSPSPGLLEKSLNALERIFRLPEFKQMYGASAQMALVDLTQRGNGSVRSTSARILVHLNVLHDQSSFF 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00568 1077 Gene3D - 696 918 IPR011989 -
Phco1g00568 1077 Gene3D - 409 694 IPR011989 -
Phco1g00568 1077 SUPERFAMILY ARM repeat 407 1067 IPR016024 -
Phco1g00568 1077 Gene3D - 88 200 IPR036537 GO:0007166
Phco1g00568 1077 Gene3D - 936 1074 IPR011989 -
Phco1g00568 1077 SMART arm_5 519 560 IPR000225 GO:0005515
Phco1g00568 1077 SMART arm_5 945 985 IPR000225 GO:0005515
Phco1g00568 1077 SMART arm_5 989 1029 IPR000225 GO:0005515
Phco1g00568 1077 SMART arm_5 602 642 IPR000225 GO:0005515
Phco1g00568 1077 SMART arm_5 480 518 IPR000225 GO:0005515
Phco1g00568 1077 SMART arm_5 437 476 IPR000225 GO:0005515
Phco1g00568 1077 SMART arm_5 643 694 IPR000225 GO:0005515
Phco1g00568 1077 CDD MLKL_NTD 111 201 - -
Phco1g00568 1077 ProSiteProfiles U-box domain profile. 332 406 IPR003613 GO:0004842|GO:0016567
Phco1g00568 1077 Coils Coil 267 294 - -
Phco1g00568 1077 CDD RING-Ubox_PUB 337 386 IPR045210 -
Phco1g00568 1077 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 88 1077 - -
Phco1g00568 1077 Pfam U-box domain 337 402 IPR003613 GO:0004842|GO:0016567
Phco1g00568 1077 SMART Ubox_2 336 399 IPR003613 GO:0004842|GO:0016567
Phco1g00568 1077 SUPERFAMILY RING/U-box 324 403 - -
Phco1g00568 1077 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 408 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00568 Phco-Chr1 4844412 4850585 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00568 1 4844412 4850585 Phco1g00568 1 4844412 4850585 ECH