Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco1g00539 | ATGGGGAAGAAGGGAAGTGGTAGTTCCTGGTTAACTGCTGTCAAAAGGGCATTCAGATCTCCCACCAAAGACACTGACAAAAGGAGTGGCAGAAGAAGAGAAGACTGTGATCAAGAAGAAGACGAGGAAAAGAAAAGGGAAAAGAGAAGATGGATTTTCAGGAAGACTCACATGAGTCACGAAGGAGTGAGCAGCAGCAACAACACTCAACAAAAGTTGAAGCATGATGTGGCGGCAACTAGTGAAGGTTCAAGGACAGACCAGGATCAGAAGCATGCACTTGCGGTGGCCGTGGCCACCGCAGAAGCAGCCATGGCCACCGCTCAGGTGGCGGTGGAGGTGGCAAGGTTGACCAAACCTGCTAGCCATGCAAGGGAGCATTATGCTGCTGTTGTGATCCAAACAGCTTTCAGAGGGTATCTTGCAAGAAGGGCACTTCGGGCACTAAAGGGTTTGGTGAAGTTGCAAGCTTTGGTTAGGGGTCACAATGTTAGGAAGCAGGCAAAGATGACCCTTAGATGCATGCAGGCTTTGGTTAGAGTTCAAGCAAGGGTCCTTGACCAGCGCATAAGGTCTTCACTTGACGGTAGCAGAAAATCCACTTTCAGTGACACCGCCAGTGTTTGGGACTCGCGGTATTTTCAGGATATTTCTGATAGGAAATCAATATCAAGAGAGGGGAGCAGCATTGCAGATGACTGGGATGAACGTCCTCACACTGTTGAAGAAGTGAAGGCTATGTTGCAGCAGAGAAAGGAAGCTGCAATGAAGAGGGACAAGACCTTATCCCAAGCCTTTTCCCAACAGATTTGGAGGAATGGTAGGACATCATCAATTGGAAATGAAGATGAGTTGGAAGAGAGACCAAAATGGTTAGATCGGTGGATGGCCACAAAGCCATGGGAGAATAGAGGAAGGGCTTCAACTGATCAAAGAGATACCATTAAGACTGTGGAGATTGACACCTCTCAGCCTTATTCGTATCTAGGAACCAATTACAGAAGATCACATCCAAATTATCAATATAACCCAAACCACCATCAACCACAAAGGCATTCCATTGCTTCCCCACTCCATAGATCTCACCAAAATGGATCCCTTCACCAATCCCCTGCAACCCCTTCTCCTGCCAAGTCAAGGCCCATCCAAGTGCGGTCAGCAAGCCCTCGTTGCATCAGAGAAGACAGAAACTACCCCACCTCCCAAACACCAAGCTTGAGGTCCAATTACCATTATACAGGAAACTTGTACCAAAATGGAAGGGCTGTTGGAAGTGGAACTAGTGGTGGTGGTGGTGCTACATTGCCTAATTACATGGCGGCAACGGAGTCTGCAAAGGCTCGAATTCGGTCACAAAGCGCGCCGAGGCAGAGGCCCTCCACACCAGAGAGGGACAGGGTGGGATCAGCAAAGAAAAGGCTTTCTTTTCCTGCTCCTGACCCTTATAGCGTGGGAGTGAGTTACGGAAATTATGGGCATAGTTTAAGGAGTCCAAGCTTCAAGAGTGTGAGTGGATCACACTTTGGGTTGGAGCAGCAGTCAAACTACTCCTCTTGCTGCACCGAAAGTCTTGGTGGTGGCGAGGTTTCTCCTTCTTCAACTGGTGACCTTAGGAGGTGGTTGAGATGA | 1629 | 0.4868 | MGKKGSGSSWLTAVKRAFRSPTKDTDKRSGRRREDCDQEEDEEKKREKRRWIFRKTHMSHEGVSSSNNTQQKLKHDVAATSEGSRTDQDQKHALAVAVATAEAAMATAQVAVEVARLTKPASHAREHYAAVVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSSLDGSRKSTFSDTASVWDSRYFQDISDRKSISREGSSIADDWDERPHTVEEVKAMLQQRKEAAMKRDKTLSQAFSQQIWRNGRTSSIGNEDELEERPKWLDRWMATKPWENRGRASTDQRDTIKTVEIDTSQPYSYLGTNYRRSHPNYQYNPNHHQPQRHSIASPLHRSHQNGSLHQSPATPSPAKSRPIQVRSASPRCIREDRNYPTSQTPSLRSNYHYTGNLYQNGRAVGSGTSGGGGATLPNYMAATESAKARIRSQSAPRQRPSTPERDRVGSAKKRLSFPAPDPYSVGVSYGNYGHSLRSPSFKSVSGSHFGLEQQSNYSSCCTESLGGGEVSPSSTGDLRRWLR | 542 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco1g00539 | 542 | SMART | iq_5 | 125 | 147 | IPR000048 | GO:0005515 | |
| Phco1g00539 | 542 | SMART | iq_5 | 148 | 169 | IPR000048 | GO:0005515 | |
| Phco1g00539 | 542 | ProSiteProfiles | IQ motif profile. | 150 | 177 | IPR000048 | GO:0005515 | |
| Phco1g00539 | 542 | FunFam | IQ-domain 11 | 125 | 176 | - | - | |
| Phco1g00539 | 542 | MobiDBLite | consensus disorder prediction | 517 | 542 | - | - | |
| Phco1g00539 | 542 | MobiDBLite | consensus disorder prediction | 302 | 317 | - | - | |
| Phco1g00539 | 542 | Pfam | Protein of unknown function (DUF4005) | 388 | 491 | IPR025064 | - | |
| Phco1g00539 | 542 | MobiDBLite | consensus disorder prediction | 326 | 412 | - | - | |
| Phco1g00539 | 542 | MobiDBLite | consensus disorder prediction | 447 | 479 | - | - | |
| Phco1g00539 | 542 | PANTHER | IQ-DOMAIN 5-RELATED | 1 | 478 | - | - | |
| Phco1g00539 | 542 | MobiDBLite | consensus disorder prediction | 326 | 382 | - | - | |
| Phco1g00539 | 542 | MobiDBLite | consensus disorder prediction | 302 | 321 | - | - | |
| Phco1g00539 | 542 | MobiDBLite | consensus disorder prediction | 59 | 77 | - | - | |
| Phco1g00539 | 542 | MobiDBLite | consensus disorder prediction | 19 | 57 | - | - | |
| Phco1g00539 | 542 | MobiDBLite | consensus disorder prediction | 1 | 89 | - | - | |
| Phco1g00539 | 542 | Gene3D | - | 123 | 179 | - | - | |
| Phco1g00539 | 542 | ProSiteProfiles | IQ motif profile. | 126 | 154 | IPR000048 | GO:0005515 | |
| Phco1g00539 | 542 | MobiDBLite | consensus disorder prediction | 395 | 412 | - | - | |
| Phco1g00539 | 542 | Pfam | IQ calmodulin-binding motif | 129 | 147 | IPR000048 | GO:0005515 | |
| Phco1g00539 | 542 | Pfam | IQ calmodulin-binding motif | 153 | 169 | IPR000048 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco1g00539 | Phco-Chr1 | 4417841 | 4420150 | Transposed |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco1g00539 | 1 | 4417841 | 4420150 | Phco1g00539 | 1 | 4417841 | 4420150 | ECH |