Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00531 ATGGGATTTAAATCTCTAAAGCAGACCAATACTCATAATGGACTGAGAATTTTGAACCCGGTGGATGAGCTACGAAACAGGACCCCAGTTAAAACCAACTCAGTTCAAGCTACGAGGAAGGGACTTCAAGGCAAGAATGTCAAGCCTAAAGGTGTAATCATATGTGGCATGAATTTGATTTTTGTTGGAACGGAGGTGGGTCCATGGAGCAAAACTGGTGGGTTAGGAGATGTTCTTGGGGGTCTTCCACCAGCATTAGCAGCTTATGGACATCGAGTTATGACTATCGCGCCACGTTACGACCAATACAAAGATGCCTGGGATACAAGTGTTGTAATTGAGCTGAAAGTAGGGGATAGAACTGAAAAGGTTCGCTACTTCCATTGCTACAAGAGGGGAGTTGATCGTGTCTTTGTGGATCACCCTTTGTTTCTTGCAAAGGTCTGGGGGAAAAGCGGAACCAAACTTTATGGACTAACTACAGGAGAAGATTATGAAGACAACCAACTACGTTTTAGTCTATTTTGCCAGGCAGCTTTGGAAGCACCAAGGGTTCTGAATCTCAATTCCAGTAAATATTTCTCCGGACCATATGGTGAAGATGTAATTTTCATCGCCAACGATTGGCACACCGCCCTTCTCCCCTGCTACTTGAAAACTATGTACCAGTCAGTAGGCATCTTTAAGAATGCTCGAGTTGTTTTATGTATCCACAACATTGCTTACCAAGGAAGATTTGCATTCACAGACTATGCACTTCTAAATCTCCCTGACCAATTTAAAAGCTCCTTTGACTTTATTGATGGGCATGTTAAACCAGTGATTGGAAGGAAAATCAATTGGATGAAAGCTGGAATTATAGAATCATGGTTTGTGATAACTGTTAGTCCAAACTATGCTAAAGAACTATTGTCAGGTCCAGACAAAGGAGTGGAACTGGACAACATCCTTCGCAAAAATGAAGATCGTTTAATTGGAATTGTTAATGGCATGGATGTTCAGGAGTGGAATCCATCCACTGACAAGTATATAGCCGTCAAATACGATGCTTCAACAGTTTTGGAAGCAAAGGCTCTTTTGAAAGAAGCCCTCCAAGCAGAAGTTGGATTGCCGGTGGACAGAAATATTCCTCTCATTGGTTTCATTGGTAGGCTTGAAGAGCAAAAAGGTTCCGATATTCTCGCAGAAGCCATTCCCCAATTTATCAAGGAGAATGTTCAGTTGGTAGCCCTAGGAACAGGAAAAAAACAAATGGAAAAACAGCTTCAGGAACTTGAAATATCATACCCTGACAAGGCCAGAGGAGTGGCAAAATTCAATGTTCCCCTAGCCCACATGATAATTGCCGGTGCTGATTTTATATTGGTTCCTAGCAGATTTGAGCCTTGTGGTCTTATTCAGTTGCAAGCTATGCGCTATGGATCAGTACCTATTGTTGCCTCAACCGGTGGATTAGTTGATACTGTCAAAGAAGGCTTCACTGGATTTCAGATGGGTTCCTTCAATGTTGAATGTGAAGCTGTGGATGCTGCTGATGTGGATGCTATAGCGAAGACTGTCAAAAGGGCCCTTGCACTCTACGGAACTCCAGCTTTCACAGAAATGATCAAGAATTGCATGGCTCAAGATCTTTCATGGAAGGGACCTGCTAAGAAGTGGGAGGATGTGCTGCTAAACTTGGAAGTACCTGGCAGTGAACCTGGAATTGATGGAGAAGAAATTGCTCCACAGGCAAAGGAAAATGTGGCAACTCCATAA 1758 0.4289 MGFKSLKQTNTHNGLRILNPVDELRNRTPVKTNSVQATRKGLQGKNVKPKGVIICGMNLIFVGTEVGPWSKTGGLGDVLGGLPPALAAYGHRVMTIAPRYDQYKDAWDTSVVIELKVGDRTEKVRYFHCYKRGVDRVFVDHPLFLAKVWGKSGTKLYGLTTGEDYEDNQLRFSLFCQAALEAPRVLNLNSSKYFSGPYGEDVIFIANDWHTALLPCYLKTMYQSVGIFKNARVVLCIHNIAYQGRFAFTDYALLNLPDQFKSSFDFIDGHVKPVIGRKINWMKAGIIESWFVITVSPNYAKELLSGPDKGVELDNILRKNEDRLIGIVNGMDVQEWNPSTDKYIAVKYDASTVLEAKALLKEALQAEVGLPVDRNIPLIGFIGRLEEQKGSDILAEAIPQFIKENVQLVALGTGKKQMEKQLQELEISYPDKARGVAKFNVPLAHMIIAGADFILVPSRFEPCGLIQLQAMRYGSVPIVASTGGLVDTVKEGFTGFQMGSFNVECEAVDAADVDAIAKTVKRALALYGTPAFTEMIKNCMAQDLSWKGPAKKWEDVLLNLEVPGSEPGIDGEEIAPQAKENVATP 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00531 585 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 52 556 - -
Phco1g00531 585 CDD GT5_Glycogen_synthase_DULL1-like 58 556 - -
Phco1g00531 585 FunFam Starch synthase, chloroplastic/amyloplastic 58 336 - -
Phco1g00531 585 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 31 563 - -
Phco1g00531 585 Pfam Glycosyl transferases group 1 376 498 IPR001296 GO:0016757
Phco1g00531 585 Gene3D Glycogen Phosphorylase B; 332 542 - -
Phco1g00531 585 Hamap Glycogen synthase [glgA]. 57 560 IPR011835 GO:0004373
Phco1g00531 585 NCBIfam glycogen/starch synthase, ADP-glucose type 57 558 IPR011835 GO:0004373
Phco1g00531 585 FunFam Starch synthase, chloroplastic/amyloplastic 337 542 - -
Phco1g00531 585 Gene3D Glycogen Phosphorylase B; 59 551 - -
Phco1g00531 585 Pfam Starch synthase catalytic domain 59 319 IPR013534 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00531 Phco-Chr1 4295147 4298741 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00531 1 4295147 4298741 Phco1g00531 1 4295147 4298741 ECH