Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00520 ATGCGCAGCAAAGAGACTGCAACTAATCAAGATAACATCACCATGGCTACATCAGAGGAAACCAATAACGGTGAAGCCATGCAACTTAAACACGTTGAAGAAGACCAAGATGGCCTCCTCTTTGCCATGAACATGGCTTCTACTGTGGTGTACCCTCTTGCTGTTAAGACCGCGAATGAGCTTGGTATCTTTGACATCATGGCCAAAGCAGGTGAAGGTGCGAAGCTCTCAGCAGAAGAGATTACAGAAAGAGTTGGCGTAAAGAATCCAGAAGCACCAAGTATGGTGGATCGGATTCTGAGGCTATTGGCTAGTCACTCCATGCTATCTTCATGTCTTGGTGAAGATGGCCCAAATTCTGGCAAGAGGCTATATAGCCTCACCTATGCATCCAAGTGTTTTGTTCCCGACGCTGATGGTGTCTCATTTGGAGATTCCTTGAACTTGATTCTGGGCAAGGTCTTCTTGGAAAGCTGGACCGAACTGAAAGGAGCCATCGTGGAAGGTGGCATAGCATTCAACAGGGTTTATGGGATGAACGCATTTGAGTATTCAGCTGTTGATCCTAAGTACAATGATGTTTTCAACAAAGCTATGTTCAACATTACCACCATAATCATAAACAGGGTTCTTGAGCTCTACGATGGTTTCAAGAACATTAACAGGCTTGTGGATGTTGGTGGTGGTCTTGGGAGCAATCTCAAACTAATCACTTCTAAATATCCCAATGTTCAAGGTCTTAATTTTGACTTGCCCCATGTCATACAACATGCCCCTACCTACCCTGGTGTGGAACATGTAGCAGGAGATATGTTTAAGAGTGTTCCCAATGGAGACGCCATTTTTATGAAGTGGATACTTCACGATTGGGGTGATGAAGAGTGTGTGAAGTTGCTGAAGAATTGCTACAAAGCGATTCCGAGTGATGGAAAAGTGATTGTGGTGGATTTGATTATTCCTGATTTGCCGGAGAAGACAGTTAGTGCGAGGAGTGGTTTCCAAGCTGATCTCTTGATGATGGTTTCAAACCCAGGAGGCAAAGAGAGAACCCAAAATGAGTTCATGGAATTGGCATTATCTTCTGGATTCAGTGGCATCAGATTCGTTTGCTCTGTCTCTGGCTTCTGGATTATGGAGTTTTTCAAGTAG 1149 0.4421 MRSKETATNQDNITMATSEETNNGEAMQLKHVEEDQDGLLFAMNMASTVVYPLAVKTANELGIFDIMAKAGEGAKLSAEEITERVGVKNPEAPSMVDRILRLLASHSMLSSCLGEDGPNSGKRLYSLTYASKCFVPDADGVSFGDSLNLILGKVFLESWTELKGAIVEGGIAFNRVYGMNAFEYSAVDPKYNDVFNKAMFNITTIIINRVLELYDGFKNINRLVDVGGGLGSNLKLITSKYPNVQGLNFDLPHVIQHAPTYPGVEHVAGDMFKSVPNGDAIFMKWILHDWGDEECVKLLKNCYKAIPSDGKVIVVDLIIPDLPEKTVSARSGFQADLLMMVSNPGGKERTQNEFMELALSSGFSGIRFVCSVSGFWIMEFFK 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00520 382 SUPERFAMILY "Winged helix" DNA-binding domain 33 137 IPR036390 -
Phco1g00520 382 PANTHER O-METHYLTRANSFERASE 42 368 IPR016461 GO:0008168
Phco1g00520 382 FunFam Caffeic acid O-methyltransferase 135 382 - -
Phco1g00520 382 Gene3D - 20 133 IPR036388 -
Phco1g00520 382 Gene3D Vaccinia Virus protein VP39 136 382 IPR029063 -
Phco1g00520 382 Pfam Dimerisation domain 54 104 IPR012967 GO:0046983
Phco1g00520 382 PIRSF O-mtase 19 382 IPR016461 GO:0008168
Phco1g00520 382 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 43 382 IPR016461 GO:0008168
Phco1g00520 382 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 141 380 IPR029063 -
Phco1g00520 382 MobiDBLite consensus disorder prediction 1 24 - -
Phco1g00520 382 Pfam O-methyltransferase domain 159 364 IPR001077 GO:0008171
Phco1g00520 382 FunFam Caffeic acid 3-O-methyltransferase 11 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00520 Phco-Chr1 4184918 4187997 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00520 1 4184918 4187997 Phco1g00520 1 4184918 4187997 ECH