Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00506 ATGTTGGAGACGTCATCACCACGCCACAAGAGAGAGAAAAGGAAACCACTGCAAAAAGTTAGAGATAAGAGAACAAGCAGAAGGAGCTCCCTGAACAATTTGAGATTTCATCTTAAAGTACATAAATTTAAGTTCAAAATATTACCTTTATTGATTGTGGCGAGGATCTGGAGAATGGTGGTGGCTGCGGGCGCTAAGTTCAATTTGAGAAGAGATAATGGTTCTTCTCATAATGGTATCAACGGTTATAGCAGTGATGGAGAACTTTCCAGAATTAGTAAGAGCGGCTGTTTTTCATCAGTGACAGAGGTGGAGAGAGACCCTTCTTGCGTTTCATTCACCACTTTCAACATTCTGGCTCCGATTTACAAACGGATTGATCCACAGAACCAAGGCCTACGAGAAAGTGACTTCAGATCATTCTGGTTGTCCAGGAATGAGAGGATTCTTGATTGCTTGCTTTCTGAATCATCTTCCATTATGTGCCTCCAGGAATTTTGGGTTGGAAATGAAGAGCTTGTTCACATGTATGAGGAGAGACTTGGAGATGCTGGCTACAATCTCTTCAAGCTTGGTCGAACCAACAACCGTGGAGATGGTCTATTGACTGCTATACATAAAGAATGTGGAGTTGTGGATTATCGAGAGTTGCTTTTTAAGGATTGTGGCGATCGTGTTGCTCAATTGCTACACGTTCAGTCAGTTGCCCCCTCACAAAACCATAAAGGCAGTGTTCCCCAAGAGTTTCTGATTGTGAACACCCACTTGTTATTTCCTCACGATTCAAGTCTCTGTGTAGTGAGATTGAATCAGGTTTACCAAATATTACAATATGTGGAATTGTACCAGAGAGAGAACAGGCTCAAACCCATGCCTATTATACTCTGTGGTGACTGGAATGGCAGCAAGCGTGGGCATGTTTACAAGTTCCTTAGGTCACAAGGGTTTGTATCATCGTATGATATTGCTAATCAATGCAGTGACAGTTATGCAGATGCTCACAAGTGGGTTAGTCACCGAAATCATAGAGGAAATATCTGTGGTGTTGACTTCATTTGGCTTTGCAATCCCAACCAAGCACGTAAACCTTTGAAGACCAGTTGGGCTGAAGCTGTATTTAGTATACTAAAATTCCAGTTGCGAAAAGCATCAATGTCTGAAAATGATGCATTTGCCTTTCTGAAGGGTGACCACTATACCGATTCTGTGACATATTTTAATTTCTCCGAAGCACTTCGTCAGGTAAAGTTGATTGATGTGCCTTATGGACTATGTTTTCAACAACTACAAGATCTATGGGATCAAGTAGATGTTGATGGAAATGGTGTTATCGACTTTGAAGAGTTCAAGCAGAAGATTTGGAATTCAGCATGTCCAGATCATGTGTTAGAAAACTTGAATGGGTGCATGGAAGATGTTAACACAGAATTGGAGCAGCAAGAAGCCATTGGTTTTATGATAAAGAATGCAATGCTGTATCCGCGTGAAGTGGAGAAAGGAGTGTGGCCAGAAGATTATTCTCTCTCTGATCATGCTAGACTCACAGCTGTGTTTTCGCCAGCAAGGATGAAATGTTCTGGCACACAAAACTGA 1593 0.4162 MLETSSPRHKREKRKPLQKVRDKRTSRRSSLNNLRFHLKVHKFKFKILPLLIVARIWRMVVAAGAKFNLRRDNGSSHNGINGYSSDGELSRISKSGCFSSVTEVERDPSCVSFTTFNILAPIYKRIDPQNQGLRESDFRSFWLSRNERILDCLLSESSSIMCLQEFWVGNEELVHMYEERLGDAGYNLFKLGRTNNRGDGLLTAIHKECGVVDYRELLFKDCGDRVAQLLHVQSVAPSQNHKGSVPQEFLIVNTHLLFPHDSSLCVVRLNQVYQILQYVELYQRENRLKPMPIILCGDWNGSKRGHVYKFLRSQGFVSSYDIANQCSDSYADAHKWVSHRNHRGNICGVDFIWLCNPNQARKPLKTSWAEAVFSILKFQLRKASMSENDAFAFLKGDHYTDSVTYFNFSEALRQVKLIDVPYGLCFQQLQDLWDQVDVDGNGVIDFEEFKQKIWNSACPDHVLENLNGCMEDVNTELEQQEAIGFMIKNAMLYPREVEKGVWPEDYSLSDHARLTAVFSPARMKCSGTQN 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00506 530 Coils Coil 463 483 - -
Phco1g00506 530 ProSiteProfiles EF-hand calcium-binding domain profile. 424 459 IPR002048 GO:0005509
Phco1g00506 530 FunFam Putative calcium-binding protein 95 522 - -
Phco1g00506 530 SUPERFAMILY DNase I-like 104 325 IPR036691 -
Phco1g00506 530 ProSitePatterns EF-hand calcium-binding domain. 437 449 IPR018247 -
Phco1g00506 530 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 27 518 - -
Phco1g00506 530 Pfam Endonuclease/Exonuclease/phosphatase family 145 348 IPR005135 GO:0003824
Phco1g00506 530 Gene3D - 391 482 - -
Phco1g00506 530 Gene3D Endonuclease/exonuclease/phosphatase 97 389 IPR036691 -
Phco1g00506 530 MobiDBLite consensus disorder prediction 1 28 - -
Phco1g00506 530 SMART efh_1 428 456 IPR002048 GO:0005509
Phco1g00506 530 SUPERFAMILY EF-hand 410 454 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00506 Phco-Chr1 4019361 4022873 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00506 1 4019361 4022873 Phco1g00506 1 4019361 4022873 ECH