Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00480 ATGGATGCACTGGACAAGACATTTTCTGAGCTTGTCAGCATCGTCAAAACGTTGTGTCCCTGGCGATCTGAACCAGCAAATGTGTCTAGGGATTTTTGGATGCCCGATCAGAGTTGTAGAGTATGCTACGAGTGTGATTCACAGTTCACCTTGCTTAACCGTAAACACCACTGTCGTTTATGTGGACGGATTTTCTGTAACAAGTGTACAACAAATTCGGTTCCTGCCCCTGTTTGGATAATAGTTGGAAAAGATTCATGTACAACAAACAAGAGTGCATCAAACAAGCTTGAGTTGGAAAAGATTCGTGTATGTAATTATTGTTACAAGCAATGGGAGCAAGGTGTAGTTGCTTTTGATAACAGTATTCCGGTTTCCAATCTGGAAAATATTGCTTCAGCATCAACTTCAAGCTTGAATAGCAGTAAAACCAGTGCCACTGCAAACAGTAGTAATATTACTCTTTGCTCCATGCCTTATTCAGTTGGGTCTTATCAACAAATGCAACAGGGTTCTGTTCTAAACCTGCATAAATTACCTGTGAAGGGAAAAGATGCGGATACTGATAGGGAAGGCTTATCAGCATTAGGAGGGAGGAATGATCTTGTAGCAGATCTGGGTGATCCATTACCAAAGCAATGCGGATTCGCAATTAATAGGACTGATGATGACGAGGATGAGTATGGTGTGTATCGGTCAGATTCTGACACGAGGCATTATCCTGAAGTGAATAACTACTATGGACAAGCTGAGTTTGATCGGATAGGCCTCATTGATGGCTCACGGAAATTGGATCCTGATGGAGAAAACATAGATGCAAAACTCTCTTCAAACTATAGTTTTGACACTGATACACAGGGTTTGGAAGGAGCCCCCATTATTGCAAAACATGAAGATGAACCTGATATCTGTGATGAAAATGAAGCCCCTTCCTCATTATATGTCTCAGAGGACGTTGATGCTGAACCTGTTGATTTTGAAAATAACGGACTTCTATGGCTCCCTCCTGAACCAGAAGACGAAGAAGATGAACACGAAGCTATTTTGTTTGATGATGATGATGATGATGAAGGGAATGTCATTGGAGAGTGGGGATATCTACGCAGTTCTAGCAGTTTTGGAAGTGGTGAATATCGACAGAGAGATAGATCAAATGAGGAGCAGAAGCAGGTAATGAAGAATGTAGTTGATGGGCATTTTAGGGCATTGGTATCTCAGCTGTTACAAGTTGAGAACCTAGCTGTTGAAGATAATGACGAGAACAGTTGGTTGGAGATTGTCACATCTCTGTCATGGGAAGCGGCTACTTTATTGAAACCAGATATGAGCAAAGGTGGAGTCATGGACCCAGCTGGTTATGTGAAAGTCAAGTGCATAGCGTGTGGGAATCGTAATGAAAGTGTGCTGGTTAAAGGAGTTGTTTGTAAAAAAAATGTGGCTCATCGGCGAATGACATCAAAAGTGGATAAACCTCGCTTGTTGATACTTGGAGGGGCTCTAGAGTATCAGCGTGTTACCAACCTTTTTTCTAGTGTAGATACCCTACTGCAGCAGGAAATGGACCATCTGAAGATGGCTGTGGCAAAGATAGCTTCGCAGCAGCCTAACATGTTGTTGGTGGAGAAATCAGTCTCACGATATGCACAGGAGTATCTTCTTGCAAAAGACATAACTCTGGTTCTCAATGTCAAGAAACCACTTTTGGAGCGTGTAGCACGTTGCACAGGTACACAAATAGTGCCTTCAATCGATCATCTTTCATCGCAAAAGTTGGGTTACTGTGAATCAGTTCATGTTGAGAAGTTTCTTGAAGACCTAAACAATGTTGGTCAGTGTGGGAAGAAAACATTGAAAACATTGATGTTTTTTGAAGGTTGCCCAAAACCATTTGGTTTCACTATTTTACTAAAAGGGGCTGACAAGGAGGAGTTAAAGAAGGTAAAGCATGTGGTTCAGTACGGAGTTTTTGCAGCTTACCATTTGGCTATGGAGACATCTTTTCTTGCCGATGAAGGAGTATCCCTGCCAGAAATTCCATTAAACAGTCTGGCCCTTCCGGATCAAGCATTAGCCATTCAGAGGTCCATTTCAACAGTTCCGGGTTTTGGTATTGCTGACAATGAAAAGCCTCAAGGGCATGAACCTGACACTGGACCGCGAAGAACCAAAAGTGTCACTATTGCTGAACTAACATCTGCAACCTGCAGTACAGAGCCATGTGTGTCTAATGGTGCTTCTCAATTGATGCCTCTTGGATCAAGTCTCAACCATTCAACTGCCTTTTACTCCTCCATTGTTGCTTCAGGAAATTCAATTCCCGAATCACACCATAATAAGCTTCTTCCATGCACTAGCAAAGATAGAAATGGAATGGACTCCAAACAACCTATGGTGGAAGAAACTTCTACAGTGGACAACACCCTGGTTATTGAGGATGATCCTACTGCAGAAAACCCTGGAACTTCAGAGAAATTATATCAAGGCATGTCAACTGACACTCCACAAAATGGTGATAGTAAAATCTCTACAAACCAGTTAAGTGGGTCAGGATCTTTATCTCCAGAAGTTGGTCTAAACCATCCCGAGAATATTGAAATCATAAATGAAGAGTTTATTCTTGAAAAAGAAGAGTTTCCTCCATCTCCGTCTGATCATCAAAGCATTTTGGTGTCTTTGTCCTCTCGGTGTGTATGGAAGGGAACTGTATGTGAGAGGTCCCATCTCTTTCGAATTAAATACTATGGCAGCTTTGATAAGCCATTGGGTCGGTTTCTGCGGGACCACTTATTTGATCAGAGTTATCGATGCCATTCTTGTGAAATGCCATCAGAAGCACATGTGCATTGCTATACTCATCGTCAGGGAACACTTACCATATCAGTTAAGAAACTACCAGAAATTATCCTACCTGGGGAAAGGGATGGAAAGATTTGGATGTGGCACAGGTGCTTGCGGTGTCCAAGAATCAATGGCTTTCCTCCTGCTACACAGAGGATAGTAATGTCTGATGCTGCTTGGGGTTTATCATTTGGGAAATTTTTGGAGCTCAGTTTCTCAAACCATGCTGCAGCCAGCAGGGTGGCAAGCTGTGGCCATTCATTACACAGAGATTGCCTTCGATTTTATGGATTTGGAAGAATGGTCGCTTGTTTTCGATATGCATCCATTGATGTTCACTCTGTCTACCTTCCCCCCCACACACTTATATTTGATTATGGGAATCAGGATTGGATACAGCAAGAATCAGATGAGGTGGTCAACCGGGCAGAACTTTTATTCTCTGAGGTACTCAATGGTCTTAGTCAAATTGGAGAGAAAAGATCTAATGCCGTTCAAATCAGTAATGGCCATAAACCATCTGAATTAAGACGTCAAGTTACTGAACTGGAGGGCATGTTGCAAAAGGAGAAACTAGAATTTGAGGAAACTCTTCGAAAGATTTTGAATCAAGAAAAGAGAAATGGTCCACCGGGGATTGACATTCTGGAAATTAATCGATTGTGGAGGCAGTTAATTTTTCAATCATATATGTGGGATCACCGCCTTATTTATGCAGCGAACTTAGTGAATTCCAATAATGGATCTGGTTCAAGCAGTCCAATTTCCGAAGATAAGGAGAAACCTGTTGATGAAAACCAAATCAGCATCAACTCTATTCATGGTGGCCCAAAGCTTAACGAAAATCCTTGTCTTGGAGGAGGAAGTGTCCTAGTTGATGGCAAAATTTCACAAGATGATGCATTGCATCAAGAAAGCGAGATGGCCAAAAAAGAAAATCATGAGAAAGATGACGGACCTATTTCAAACAGCAAAAGCATAAATGATCAATCTGGTCTCTTAGAACCTGAATTGGGTGTTCTTAGAACTCTATCAGATGGGCCATTTCCCGTCATACCTAGTTTGTCTGAAACACTTGATGCAAAATGGACGGGTGAAAATCACTCCGGATTTGGAATTCAAAAGGATAACAGTTTTGTGAATCCCGATATACATTTGGCAGATACTTCCATGATCGGTGTACAAAAGGAAACATATCTAGGGGATCGTACAGAAGATCAAAATGGTTCCAAGAGTTTATATTCTTCTTTCAAAGGTCATGATAATATGGAAGACTCTTCGAGCTGGTTAGGAATGCCCTTCTTGAACTTCTATCGCCAATTTAACAAAAACCTTTTTGCTAGTACGCAAAAGTTTGATACCCTAGTTGACTACAATCCTGTTTACATGTCATCTTTCCGGAAGCAGGAACTCCAGGGTGGGGCAAGGCTTCTTTTGCCAATTGGTGTCAATGACACTGTAATTCCAGTATATGATGATGAACCCTCAAGTGTTATAGCTTATGCCTTAATGTCACCAGAATATCACTTCCAATTGACTGATGAAGGAGAAAGGCCAAGAGAAGGAAATGAGTTCACTTCATCATATTTTTCTGACTCAGGCACCTTCCAGTCATTCTCTTCTGTTGATGAAACAGCCTTTGATTCTCAGAAAAGTTTTGGATCGATAGAGGAAATGATATTTTCCATGTCTGGGTCTCGTAGTTCATCAATGTTTGATCCAATGTTACATACCAAGGCTATGCATGCCAGAGTTTCCTTTGGAGAAGACGGTCCCCTTGGCAAGGTAAAATATTCTGTGACTTGTTACTATGCCAAGCGTTTTGAAGCCTTAAGAAGGGTGTCTTGTCCTTCTGAGCTTGACTATATAAGGTCTCTGAGTCGCTGTAAGAAATGGGGAGCTCAAGGTGGGAAGAGTAATGTATTTTTTGCAAAAACATTGGATGATCGATTTATCATCAAACAAGTTACAAAAACAGAGCTTGAATCATTCATTAAATTTGGTCCTGAATACTTCAAGTATCTTTCTGAATCCATAGCCTCTGGAAGTCCGACATGTCTGGCTAAAATTCTTGGCATATACCAGGTTACATCGAAGCATCTTAAAGGAGGGAAAGAGTCAAGGATGGATGTTTTGGTTATGGAGAATCTTCTGTATAGGAGGACTGTAACACGACTTTACGATCTCAAAGGATCTTCCAGGTCTAGGTATAATGCAGATAGTACCGGGAAAAACAAAGTTCTACTGGACCAGAACTTAATTGAAGCAATGCCAACTTCTCCTATTTTCGTGGGAAACAAAGCAAAACGATCTTTAGAGAGGGCTGTCTGGAATGACACTGGTTTTCTTGCTTCAATTGATGTAATGGACTATTCTTTACTGGTTGGGGTGGATGAAGAGAAGCATGAGTTGGTTATTGGAATCATTGATTTCATGAGGCAGTATACCTGGGACAAGCATCTTGAAACATGGGTAAAAGCTTCAGGCATACTTGGGGGACCAAAGAACACACCTCCAACAGTTATATCACCCAAGCAATACAAGAAAAGGTTCAGGAAAGCAATGACCACTTACTTTCTCATGCTTCCAGATCAGTGGTCTCCTCCTTCTATGGCTGCTAGTAATTCTCAGTCTGATTTAGGTGACGACAACCCACAATTTAGGACCCCAGCTGAATAA 5517 0.4144 MDALDKTFSELVSIVKTLCPWRSEPANVSRDFWMPDQSCRVCYECDSQFTLLNRKHHCRLCGRIFCNKCTTNSVPAPVWIIVGKDSCTTNKSASNKLELEKIRVCNYCYKQWEQGVVAFDNSIPVSNLENIASASTSSLNSSKTSATANSSNITLCSMPYSVGSYQQMQQGSVLNLHKLPVKGKDADTDREGLSALGGRNDLVADLGDPLPKQCGFAINRTDDDEDEYGVYRSDSDTRHYPEVNNYYGQAEFDRIGLIDGSRKLDPDGENIDAKLSSNYSFDTDTQGLEGAPIIAKHEDEPDICDENEAPSSLYVSEDVDAEPVDFENNGLLWLPPEPEDEEDEHEAILFDDDDDDEGNVIGEWGYLRSSSSFGSGEYRQRDRSNEEQKQVMKNVVDGHFRALVSQLLQVENLAVEDNDENSWLEIVTSLSWEAATLLKPDMSKGGVMDPAGYVKVKCIACGNRNESVLVKGVVCKKNVAHRRMTSKVDKPRLLILGGALEYQRVTNLFSSVDTLLQQEMDHLKMAVAKIASQQPNMLLVEKSVSRYAQEYLLAKDITLVLNVKKPLLERVARCTGTQIVPSIDHLSSQKLGYCESVHVEKFLEDLNNVGQCGKKTLKTLMFFEGCPKPFGFTILLKGADKEELKKVKHVVQYGVFAAYHLAMETSFLADEGVSLPEIPLNSLALPDQALAIQRSISTVPGFGIADNEKPQGHEPDTGPRRTKSVTIAELTSATCSTEPCVSNGASQLMPLGSSLNHSTAFYSSIVASGNSIPESHHNKLLPCTSKDRNGMDSKQPMVEETSTVDNTLVIEDDPTAENPGTSEKLYQGMSTDTPQNGDSKISTNQLSGSGSLSPEVGLNHPENIEIINEEFILEKEEFPPSPSDHQSILVSLSSRCVWKGTVCERSHLFRIKYYGSFDKPLGRFLRDHLFDQSYRCHSCEMPSEAHVHCYTHRQGTLTISVKKLPEIILPGERDGKIWMWHRCLRCPRINGFPPATQRIVMSDAAWGLSFGKFLELSFSNHAAASRVASCGHSLHRDCLRFYGFGRMVACFRYASIDVHSVYLPPHTLIFDYGNQDWIQQESDEVVNRAELLFSEVLNGLSQIGEKRSNAVQISNGHKPSELRRQVTELEGMLQKEKLEFEETLRKILNQEKRNGPPGIDILEINRLWRQLIFQSYMWDHRLIYAANLVNSNNGSGSSSPISEDKEKPVDENQISINSIHGGPKLNENPCLGGGSVLVDGKISQDDALHQESEMAKKENHEKDDGPISNSKSINDQSGLLEPELGVLRTLSDGPFPVIPSLSETLDAKWTGENHSGFGIQKDNSFVNPDIHLADTSMIGVQKETYLGDRTEDQNGSKSLYSSFKGHDNMEDSSSWLGMPFLNFYRQFNKNLFASTQKFDTLVDYNPVYMSSFRKQELQGGARLLLPIGVNDTVIPVYDDEPSSVIAYALMSPEYHFQLTDEGERPREGNEFTSSYFSDSGTFQSFSSVDETAFDSQKSFGSIEEMIFSMSGSRSSSMFDPMLHTKAMHARVSFGEDGPLGKVKYSVTCYYAKRFEALRRVSCPSELDYIRSLSRCKKWGAQGGKSNVFFAKTLDDRFIIKQVTKTELESFIKFGPEYFKYLSESIASGSPTCLAKILGIYQVTSKHLKGGKESRMDVLVMENLLYRRTVTRLYDLKGSSRSRYNADSTGKNKVLLDQNLIEAMPTSPIFVGNKAKRSLERAVWNDTGFLASIDVMDYSLLVGVDEEKHELVIGIIDFMRQYTWDKHLETWVKASGILGGPKNTPPTVISPKQYKKRFRKAMTTYFLMLPDQWSPPSMAASNSQSDLGDDNPQFRTPAE 1838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00480 1838 CDD PIPKc_PIKfyve 1542 1805 IPR044769 GO:0000285
Phco1g00480 1838 SUPERFAMILY GroEL apical domain-like 466 638 IPR027409 -
Phco1g00480 1838 Gene3D - 1664 1806 - -
Phco1g00480 1838 Pfam TCP-1/cpn60 chaperonin family 405 663 IPR002423 GO:0005524
Phco1g00480 1838 Pfam FYVE zinc finger 33 112 IPR000306 GO:0046872
Phco1g00480 1838 CDD Fab1_TCP 401 672 - -
Phco1g00480 1838 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 1482 1662 IPR027484 -
Phco1g00480 1838 SMART fyve_4 28 114 IPR000306 GO:0046872
Phco1g00480 1838 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1581 1747 IPR002498 GO:0016307|GO:0046488
Phco1g00480 1838 MobiDBLite consensus disorder prediction 1247 1277 - -
Phco1g00480 1838 MobiDBLite consensus disorder prediction 702 722 - -
Phco1g00480 1838 MobiDBLite consensus disorder prediction 809 858 - -
Phco1g00480 1838 Gene3D GroEL 465 638 IPR027409 -
Phco1g00480 1838 FunFam 1-phosphatidylinositol 3-phosphate 5-kinase isoform X1 465 638 - -
Phco1g00480 1838 SUPERFAMILY FYVE/PHD zinc finger 31 114 IPR011011 -
Phco1g00480 1838 PANTHER 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED 23 1818 - -
Phco1g00480 1838 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 1481 1805 IPR002498 GO:0016307|GO:0046488
Phco1g00480 1838 SMART PIPK_2 1515 1806 IPR002498 GO:0016307|GO:0046488
Phco1g00480 1838 FunFam 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B 1506 1662 - -
Phco1g00480 1838 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 36 113 IPR017455 -
Phco1g00480 1838 MobiDBLite consensus disorder prediction 1815 1838 - -
Phco1g00480 1838 MobiDBLite consensus disorder prediction 1247 1268 - -
Phco1g00480 1838 FunFam 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B 24 119 - -
Phco1g00480 1838 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 118 IPR013083 -
Phco1g00480 1838 Coils Coil 1133 1153 - -
Phco1g00480 1838 MobiDBLite consensus disorder prediction 1815 1830 - -
Phco1g00480 1838 FunFam 1-phosphatidylinositol 3-phosphate 5-kinase FAB1 1664 1806 - -
Phco1g00480 1838 SUPERFAMILY SAICAR synthase-like 1538 1805 - -
Phco1g00480 1838 MobiDBLite consensus disorder prediction 820 856 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00480 Phco-Chr1 3803252 3811965 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00480 1 3803252 3811965 Phco1g00480 1 3803252 3811965 ECH