Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00460 ATGAGGCGAAAAAACTTCTCAAAACACAATTTTTTTATTGGGCTTTCTAACAGTCTCTTGCTGCACTCACTGAAACACCTAGGGTTTTCGAGCTCGTTGTTTCGGAGTTTGCGACGCACGCACGCAACCATGGCCGCCCCCACCAACGCCGCTGCTGCCTCGCCGCGCCAGCTTTCCCAGAAGGAAGCCGACATCCAGATGATGTTGGCAGCCGACGTCCACCTCGGCACCAAGAACTGTGACTTCCAAATGGAACGCTACATCTTCAAGCGCCGCAACGACGGTATTTACATTATCAACCTTGGAAAGACGTGGGAGAAGCTTCAGCTTGCTGCCAGGGTTATTGTTGCAATTGAAAACCCTCAGGATATTATTGTGCAATCTGCTAGGCCTTATGGTCAGAGAGCTGTACTCAAGTTTGCTCAGTATACTGGTGCTCATGCCATTGCTGGAAGGCATACTCCTGGTACCTTTACCAATCAGCTCCAAACCTCATTCAGTGAACCTCGCCTCCTTATCCTCACGGATCCAAGAACAGATCATCAGCCCATTAAGGAAGGGGCTCTTGGAAACATTCCAACCATTGCTTTCTGTGACACTGACTCACCTATGAGGTATGTGGACATTGGAATTCCTGCCAACAACAAGGGCAAACACAGCATTGGTTGTCTCTTTTGGCTTCTTGCCAGGATGGTGTTGCAAATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGGTCGACTTGTTTTTCTATAGAGAACCTGAGGAGGCTAAGCAACAAGAGGAGGAGGAAGCTCCTGCTGGTGATTATGCCATTACTGACTATAATCCTGGTGCTATTGCTGCTGATGGCCAGTGGCCGGGAACAATTGATCAATCTTGGACAGATGCTGTTCCACAACCTATTCCAGCTGTACCTGGTGTCAACTGGGGAGCACCACCAACTTCAGACGCATCTGTTGCAGTTGCAGGAGATTGGGGTGAGGCTGTTCCACCTCCACAGCAAATCCCTCTTCCTCCTTCTGGAGTTGAATCTGTCCAACCAACTGGCTGGGAGTAA 1068 0.4981 MRRKNFSKHNFFIGLSNSLLLHSLKHLGFSSSLFRSLRRTHATMAAPTNAAAASPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAGDYAITDYNPGAIAADGQWPGTIDQSWTDAVPQPIPAVPGVNWGAPPTSDASVAVAGDWGEAVPPPQQIPLPPSGVESVQPTGWE 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00460 355 Hamap 40S ribosomal protein SA [rps-0]. 52 300 IPR027498 GO:0003735|GO:0006412|GO:0015935
Phco1g00460 355 PRINTS Ribosomal protein S2 signature 65 83 IPR001865 GO:0003735|GO:0005840|GO:0006412
Phco1g00460 355 PRINTS Ribosomal protein S2 signature 144 161 IPR001865 GO:0003735|GO:0005840|GO:0006412
Phco1g00460 355 PRINTS Ribosomal protein S2 signature 207 221 IPR001865 GO:0003735|GO:0005840|GO:0006412
Phco1g00460 355 PRINTS Ribosomal protein S2 signature 95 104 IPR001865 GO:0003735|GO:0005840|GO:0006412
Phco1g00460 355 PRINTS Ribosomal protein S2 signature 169 186 IPR001865 GO:0003735|GO:0005840|GO:0006412
Phco1g00460 355 PRINTS Ribosomal protein S2 signature 186 197 IPR001865 GO:0003735|GO:0005840|GO:0006412
Phco1g00460 355 PANTHER 40S RIBOSOMAL PROTEIN SA 53 339 IPR005707 GO:0003735|GO:0006412|GO:0015935
Phco1g00460 355 FunFam 40S ribosomal protein SA 64 270 - -
Phco1g00460 355 Pfam Ribosomal protein S2 68 162 IPR001865 GO:0003735|GO:0005840|GO:0006412
Phco1g00460 355 Pfam Ribosomal protein S2 167 232 IPR001865 GO:0003735|GO:0005840|GO:0006412
Phco1g00460 355 SUPERFAMILY Ribosomal protein S2 60 250 IPR023591 -
Phco1g00460 355 Gene3D - 64 270 - -
Phco1g00460 355 CDD RPS2 68 234 IPR001865 GO:0003735|GO:0005840|GO:0006412
Phco1g00460 355 NCBIfam 30S ribosomal protein S2 60 256 IPR005707 GO:0003735|GO:0006412|GO:0015935
Phco1g00460 355 ProSitePatterns Ribosomal protein S2 signature 2. 169 193 IPR018130 GO:0003735|GO:0005840|GO:0006412
Phco1g00460 355 MobiDBLite consensus disorder prediction 299 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00460 Phco-Chr1 3629097 3630995 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00460 1 3629097 3630995 Phco1g00460 1 3629097 3630995 ECH