Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00426 ATGGGAATAGCGTTCAGCCGCGATGCCAGGTTCCTCAGCTGGATGCAAAATAAACTTGGTGGAAAACAAGTCAGCAGAAAACCAAATACACACACAAGTGCTACATATCATGCAAAACAAGAACCTCGAGAGGAATTCAGCGATTGGCCTCATGGTTTACTAGCAATTGGAACATTTGGAAATAACAGTGAAATCAAAGAAAACTCAGATGACCAAAATGCACAGGAGGATCCATCCTCGTCAGAGGAAATAGCAGACTTCACTCCTGAAGAAATTGGGAATCTACAGAAGGAATTAACCAAACTCCTGAGACGAAAACCAAATGTGGAAAAGGAAATTTCTGAGCTTCCTCTGGACAGATTTCTTAACTGCCCTTCAAGCTTGGAGGTTGATAGGAGAATCAGTAATGCGCTATGCAGTGAATCAGATGATAAAGAAGAAGATATTGAGAAGACATTGAGTGTGATAATTGACAAATGCAAAGACATTTGTGCGCATAACAGAAAGAAAACAATTGGGAAGAAATCTATTTCTTTCCTTCTGAAGAAGATATTTGTTTGTAGAAGTGGATTTGCTCCAACGCCTAGCCTTAGAGATACCCTTCAAGAGTCAAGAATGGAGAAGCTTTTGAGGACAATGCTTCACAAGACAATCTACACCCAAAATTCTTCTCGGACATCTTTGATGACGAAGTGCATAGACGACAAGAAGATGACAAGGAAGAGGAGTGATGATGAATCAGATGAGAAAACTGGTGATGGCTGTAAATGGGTCAAGACTGATTCTGAATGCCCTGAGGATATTTATCTTTCCACTTCACTTGCCAGCTATCTTGACAAGAAACTTCTTGTATTGCTGAGAGATGGTAGAAAGCTCATGGGGACACTTCGCTCTTTTGATCAATTTGCTAATGCAGTTCTTGAGGGTGCCTGTGAGAGGGTTATTGTTGGTGAGCTGTATTGTGACATCCCTTTGGGTCTCTATGTGATCCGTGGGGAAAATGTTGTTCTAATTGGTGAACTGGACTTGGAGAGGGAGGAACTTCCCGAACACATGACTCGTGTTTCTACAGCAGAAATCAAGAGGGCACAGAAAGCTGAAAGGGAGGCCTCAGATCTGAAAGGGACTATGAGGAAGAGAATGGAATTCCTTGACTTTGACTAG 1164 0.4192 MGIAFSRDARFLSWMQNKLGGKQVSRKPNTHTSATYHAKQEPREEFSDWPHGLLAIGTFGNNSEIKENSDDQNAQEDPSSSEEIADFTPEEIGNLQKELTKLLRRKPNVEKEISELPLDRFLNCPSSLEVDRRISNALCSESDDKEEDIEKTLSVIIDKCKDICAHNRKKTIGKKSISFLLKKIFVCRSGFAPTPSLRDTLQESRMEKLLRTMLHKTIYTQNSSRTSLMTKCIDDKKMTRKRSDDESDEKTGDGCKWVKTDSECPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGELYCDIPLGLYVIRGENVVLIGELDLEREELPEHMTRVSTAEIKRAQKAEREASDLKGTMRKRMEFLDFD 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00426 387 MobiDBLite consensus disorder prediction 61 82 - -
Phco1g00426 387 SMART Sm3 272 340 IPR001163 -
Phco1g00426 387 MobiDBLite consensus disorder prediction 21 44 - -
Phco1g00426 387 Coils Coil 92 112 - -
Phco1g00426 387 CDD LSm1 271 341 IPR034104 GO:0000956
Phco1g00426 387 FunFam U6 snRNA-associated Sm-like protein LSm1 271 384 - -
Phco1g00426 387 Gene3D - 271 384 - -
Phco1g00426 387 Pfam LSM domain 273 339 IPR001163 -
Phco1g00426 387 ProSiteProfiles Sm domain profile. 269 344 IPR047575 GO:0003723
Phco1g00426 387 MobiDBLite consensus disorder prediction 21 36 - -
Phco1g00426 387 PANTHER OS03G0406300 PROTEIN 11 264 IPR044683 GO:0009630|GO:0040008
Phco1g00426 387 MobiDBLite consensus disorder prediction 61 90 - -
Phco1g00426 387 SUPERFAMILY Sm-like ribonucleoproteins 272 342 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00426 Phco-Chr1 3386876 3396060 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00426 1 3386876 3396060 Phco1g00426 1 3386876 3396060 ECH