Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00413 ATGGCGGTTTCTACGATAGCGTTGTACGCGAGTCCGCCGAGCAGCGTGTGTTCCACGCCGCACCCTTGCCAGATCAACGCTCACGCTTCATACGACTTCGAATTGGGGTCGCGATCTTCGTCACCGGCGGCTTCGACGGCTCCTCCGTCGACGTCGCAGAAGCCGGTGATGGGCGGCCTCTCGTGCCTGTTATCGTCTCCGGCGGTGAAACACGCGCCGTTGACGTCGAACTTTACCGGCGAGGAGGACGATTTGAAGGAGTTGAGCAGTTCCTTCTCGTTTTCTCCGAGCAAGTTTGGTGGGTCTTCATGGAAGAGGGATCAGAGTCCTGTTTCGGTTTTTCATGGTCCTGTTTCGTGTAGTTCTAGCAGCAGAAGTTCCATTAGTTCTACCTCTGTGAGAAGTGTCAGGGGTGGAACTAGTGGGTTGTTTCATGGGTTTGTGAGGAATGCGTTGGGGTCTTGTTTGGATTATGACTTAGATGCGGGTGATTCTTCTGCCGCCCTTGTGGATGAGTTGACCTTCAATTTAGAGGATAATTTCGTGGAGGGTGGGTTTCATTTTGAGCCCTATGCTAAAAAGTTACTGCTGGGGGCGCAGTTGAGACACAAAATCTTCTGTGAGGAGTTTGTCATCAAAGCCTTTTGTGAAGCTGAGAAGGCACACAGAGGGCAGATGCGGGCTAGTGGGGATCCTTACTTGCAGCATTGTTTGGAGACTGCTGTGTTGCTGGCTTTGATTGGTGCCAATTCCACTGTTGTGGCTGCGGGGCTCTTGCATGACACGCTGGATGATGCTTTTCTGACTTATGATTGTATATTTGGAACGTTTGGCGCCGGAGTTGCTGATTTAGTTGAAGGGGTATCTAAACTGAGCCACTTAAGCAAGCTGGCTCGAGAAAATAACACAGCTTGCAAGTCAGTTGAAGCAGACCGCTTGCATACTATGTTCCTTGCCATGGCAGATGCAAGAGCTGTCCTCATTAAACTGGCAGATCGGTTGCATAATATGATGACACTAGATGCATTACCAGTGACCAAGCGGCAGAGGTTTGCAAAGGAGACTTTGGAGATTTTTGCACCATTGGCCAATCGCTTAGGAATCTCTAGCTGGAAAGAACAATTGGAAAATTTGTGTTTTAAGCATCTCAACCCAAGCCAGCACGAGGAGCTTTCATCAAAGCTTGTGGAGTCGTACGATGATGCAATGATTACTTGTGCGATAGAGAGATTAGAGCAAGCTCTTAAAGATGAAGGCATATCTTATAGTGTCATTTCGGGGCGGCACAAGAGCTTGTATAGCGTTTACTGCAAAATGTTGAAGAAGAAACTTACCATAGATGATATCCATGACATTTATGGACTGCGCTTGATTGTTGATAAGGATGAAGACTGTTATAAAGCCTTAACAGCTGTTCATCGGCTATGGTCTGAGGTGCCTGGAAAGCTGAAAGATTACATATGTCGCCCCAAGTTCAATGGATATCAATCTCTGCATACTGTGGTGATGGGTGAAGGCAATGTTCCCCTTGAAGTACAAATTCGAACAAAAGATATGCATTTGCAAGCAGAATTTGGATTTGCAGCTCACTGGAGATACAAGGAAGATGATTGCCAGCATTCTTCATTTGTGCTTCAGATGGTGGAATGGGCTCGATGGGTTGTTACCTGGCAGTGCGAAGCAATGAGTAGAGATTGTTCATCTGTTGGATATGTTGATTCAGTCAAACCCCCATGCAAGTTCCCTTCCCATGCTGCTGATTGCCAATATTCCTATAGGCCTGATTGTGGTCAGAATGGACCCGTGTTCGTTATCATGATCGAGAATGACAAGATGTCTGTCCAAGAATTCAGTGCAGACTCAACCATATTGGATTTGTTGGAAAGAGCTGGGCGTGCAAGCTCTAGGTTGACAACATATAGGTTCCCATTGAAGGAAGAGTTGAGGCCAAGGCTGAATCACAAGCCTGTGAGTGATCCCAATAGCAAGTTGAAGATGGGAGATGTTATTGAACTTACACCTGCCATACCTGACAAGTATCTTACAGAATACAGGGAAGAAATCCAGCGTATGTATGATCGAGGGCTAACCGTATCAAGCATGGGAACTTCTGGAAGTACCATGGTTGGCTCAAGAAGTTGA 2142 0.4697 MAVSTIALYASPPSSVCSTPHPCQINAHASYDFELGSRSSSPAASTAPPSTSQKPVMGGLSCLLSSPAVKHAPLTSNFTGEEDDLKELSSSFSFSPSKFGGSSWKRDQSPVSVFHGPVSCSSSSRSSISSTSVRSVRGGTSGLFHGFVRNALGSCLDYDLDAGDSSAALVDELTFNLEDNFVEGGFHFEPYAKKLLLGAQLRHKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANSTVVAAGLLHDTLDDAFLTYDCIFGTFGAGVADLVEGVSKLSHLSKLARENNTACKSVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPVTKRQRFAKETLEIFAPLANRLGISSWKEQLENLCFKHLNPSQHEELSSKLVESYDDAMITCAIERLEQALKDEGISYSVISGRHKSLYSVYCKMLKKKLTIDDIHDIYGLRLIVDKDEDCYKALTAVHRLWSEVPGKLKDYICRPKFNGYQSLHTVVMGEGNVPLEVQIRTKDMHLQAEFGFAAHWRYKEDDCQHSSFVLQMVEWARWVVTWQCEAMSRDCSSVGYVDSVKPPCKFPSHAADCQYSYRPDCGQNGPVFVIMIENDKMSVQEFSADSTILDLLERAGRASSRLTTYRFPLKEELRPRLNHKPVSDPNSKLKMGDVIELTPAIPDKYLTEYREEIQRMYDRGLTVSSMGTSGSTMVGSRS 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00413 713 ProSiteProfiles S4 RNA-binding domain profile. 651 688 - -
Phco1g00413 713 CDD NT_Rel-Spo_like 406 525 IPR007685 GO:0015969
Phco1g00413 713 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 118 678 - -
Phco1g00413 713 Gene3D Beta Polymerase, domain 2 388 517 IPR043519 -
Phco1g00413 713 SUPERFAMILY HD-domain/PDEase-like 194 384 - -
Phco1g00413 713 ProSiteProfiles HD domain profile. 233 337 IPR006674 -
Phco1g00413 713 FunFam GTP pyrophosphokinase RelA 195 384 - -
Phco1g00413 713 FunFam GTP pyrophosphokinase RelA 385 517 - -
Phco1g00413 713 SMART hd_13 229 346 IPR003607 -
Phco1g00413 713 CDD HDc 231 359 IPR003607 -
Phco1g00413 713 SMART RelA_SpoT_2 427 537 IPR007685 GO:0015969
Phco1g00413 713 Pfam HD domain 218 368 - -
Phco1g00413 713 Pfam Region found in RelA / SpoT proteins 427 536 IPR007685 GO:0015969
Phco1g00413 713 SUPERFAMILY Nucleotidyltransferase 374 563 IPR043519 -
Phco1g00413 713 Gene3D Hypothetical protein af1432 200 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00413 Phco-Chr1 3221512 3225025 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00413 1 3221512 3225025 Phco1g00413 1 3221512 3225025 ECH