Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00410 ATGTCCCATCAGGAGCAAGCCTTAGTGTCCCTTCTCTCCCAGCTCGCCCTTTCCTTCGACGGCGCCGTTTTAGGCTTCGCCTTGGCCTACGCCGCCATCCGCACCCTCTTCAAATTCTCCGCCACCTCCGCCGCCCTCCGCAAGCTCCGCCGCGCCCCCTACCTCTCCGTTTCCGACCTCCGATCACTCCTCGCCGATACTCCCTCTGACGCTGACTCTAACTCCGACGGTGGCACAATCGTAATTGTCCGCGGCAACGTTGATGCTAAGTCCGCAGTCGATGGCTCCTGGAAAACCCTCAGACCCGGCGTCTTGGTTTCTCGCGAGTCCGGTGATAAAGGCGTCATCCTTCAAAGAACTCAAACGTGTATATACAATGAATGGAAAGGATTATTTGGATGGACTTCTGATCTTCGAGCCATATTTGCAAGATCTTGGAGACAGCAAGAGTCTACATCTTTAAGGAAGGTGCCTTTTGTTCTAATTGATGTTGGATGGCGGCCATCTACTGAGTATGTTGTTGTCAACATGGATGGCTCAAGACATCCATTGCCTCTGACAACAGTTTATCATAAGTTGCAACCAATAAATGCTTCTCCTTATACTTTCTTGCAAGCACTTTTTGGACATGAATATCCGGTTGGACTGCTAGATGAAGAGAAAATACTTCCAGTGGGGAAGGATGTCACTGCTGTTGGCCTTGTCAGTCTAAATAATGGAGTTGCTGAAATTAAGTCATGCAAAGATCTACCATATTTTCTATCTGACTTGAGCAAAGATCAGATGATGGTGGATCTTTCCTTCAAAACGAAAATTCTGTTTTGGGGTGGCATTGCTCTCGGTTCAATGTCAGTTGGGATCCTTGGCTATGCAGTTGTGAGGAACTGGAATAAGTGGAAACAGTGGAAGCTACAGAGGCAGCTCCAGCAACAAAGGCAAGCAGTGAGTGATGTTGAACCTCAGGTGGATGATGAAATTGAAGATGTTCCAGATGGACAATTATGTGTTATATGTCTGATGAGGAGAAGGCGTTCTGTCTTCATCCCCTGTGGCCACCTTGTGTGTTGCCAAGGGTGTGCCATATCAGTTGAACATGAAGTGGCACCTAAATGTCCTGTTTGTCGTCAGGAGATTCGAAATTCAGTGCGGATTTTTGAATCATGA 1164 0.4777 MSHQEQALVSLLSQLALSFDGAVLGFALAYAAIRTLFKFSATSAALRKLRRAPYLSVSDLRSLLADTPSDADSNSDGGTIVIVRGNVDAKSAVDGSWKTLRPGVLVSRESGDKGVILQRTQTCIYNEWKGLFGWTSDLRAIFARSWRQQESTSLRKVPFVLIDVGWRPSTEYVVVNMDGSRHPLPLTTVYHKLQPINASPYTFLQALFGHEYPVGLLDEEKILPVGKDVTAVGLVSLNNGVAEIKSCKDLPYFLSDLSKDQMMVDLSFKTKILFWGGIALGSMSVGILGYAVVRNWNKWKQWKLQRQLQQQRQAVSDVEPQVDDEIEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEHEVAPKCPVCRQEIRNSVRIFES 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00410 387 CDD RING-HC_SPL2-like 330 376 - -
Phco1g00410 387 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 387 IPR044247 GO:0004842
Phco1g00410 387 SUPERFAMILY RING/U-box 334 381 - -
Phco1g00410 387 SMART ring_2 335 374 IPR001841 -
Phco1g00410 387 Pfam Zinc finger, C3HC4 type (RING finger) 333 380 - -
Phco1g00410 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 387 IPR013083 -
Phco1g00410 387 ProSiteProfiles Zinc finger RING-type profile. 335 375 IPR001841 -
Phco1g00410 387 Pfam E3 Ubiquitin ligase 141 287 IPR022170 GO:0004842|GO:0006996|GO:0016567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00410 1 3210745 3216982 Phco1g00410 1 3210745 3216982 ECH