Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00407 ATGAATACCATTCTCATTCTTTTCTTCTGTGCTCTTGTTTCGTCCACTTCCCATGCTGGTAATCTGCAAGAATTCTGCGTAGCAGACCTCAAGGATTCAGATAGCCCTTCTGGGTATCACTGCAAGCCTCCTAACACAGTAACAGCTGCAGACTTTAAGCACACTTTTGGGCCAGGCATTCCAGCCCCAACCAAATCCACACTATACCCTGCCACTGTTGTCCAGGTTCCTGCTCTGAATGGTCTTGGCATTTCTGCAGGACGTGTAGAGATCGAGAAAGGTGGATCGCTTCCATTGCACACACATGCTGCCAATGAAATACTAATCATGCATCAAGGTGAAATGACCGTTGGACTCTTGACACCTACCAGAGCTTATGTCAATAAACTCAAACCAGGAGATCTTACAGTTTTCCCAGATGGACTGCAACATTATCTTGTCAATTCTGGTAACGAGAAAGCCGTTGCTTTTGCCACTTATAGTAGCCCTAACCCTCGTATCGATTTTCTTTATCAAATATTATTTGCCAACAACGTCTCTGCCAACACCATTGCCCAAACTACCTTCCTTGATGAACCCCAAGTGAGGAAGCTCCAGGCTCGTTTCAATGGCGGCAGCTAG 621 0.4589 MNTILILFFCALVSSTSHAGNLQEFCVADLKDSDSPSGYHCKPPNTVTAADFKHTFGPGIPAPTKSTLYPATVVQVPALNGLGISAGRVEIEKGGSLPLHTHAANEILIMHQGEMTVGLLTPTRAYVNKLKPGDLTVFPDGLQHYLVNSGNEKAVAFATYSSPNPRIDFLYQILFANNVSANTIAQTTFLDEPQVRKLQARFNGGS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00407 206 Gene3D Jelly Rolls 17 206 IPR014710 -
Phco1g00407 206 SMART Cupin_1_3 54 196 IPR006045 -
Phco1g00407 206 PRINTS Germin signature 128 148 IPR001929 GO:0030145
Phco1g00407 206 PRINTS Germin signature 161 176 IPR001929 GO:0030145
Phco1g00407 206 PRINTS Germin signature 99 119 IPR001929 GO:0030145
Phco1g00407 206 CDD cupin_OxOx 21 202 IPR001929 GO:0030145
Phco1g00407 206 Pfam Cupin 63 195 IPR006045 -
Phco1g00407 206 SUPERFAMILY RmlC-like cupins 67 204 IPR011051 -
Phco1g00407 206 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 14 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00407 Phco-Chr1 3200084 3200704 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00407 1 3200084 3200704 Phco1g00407 1 3200084 3200704 ECH