Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00406 ATGTGGTATCAGCGTTGCATAGTGGTGGATGAAAGAACTAATATTTCTGCTCAACTTTTCCCACATTACCTTCACACCAAATCCCTTTATCGAAGTTTCAAGATAAAGATGATTTACATTCTTTTCCTCTTCTCTCTGCTATCATTCACTTCCAATGCAGCAGTCAATGATTTCTGTGTGGCAGACCTAAAGGGTCCAGATAGCCCTTCGGGCTATCAGTGCAAGCCACCTAAAACAGTCACGGTGGATGACTTTGTGTTCTCTGGCCTTGTAGCTGGAAACACCACAAACACTTTCAATGCTGCATTAACTTCTGCATTTGTTACTGATTTTCCAGGTGTGAATGGTCTTGGTGTATCAGCAGCACGGTTAGACATAGCTAAAGGAGGATCAATCCCAATGCACACACACCCTGCTGCCACTGAACTTTTGATAATGGTGGAAGGTAAAATCACTGCTGGTTTTATGACACCCTTTGCAGTTTATACCAAGACACTGAAACCAGGAGATATTATGGTTTTCCCACAAGGACAATTACATTTTCAAGTGAATTCTGGAAAAGGAAAAGCCACTGCTTTTCTGGCTTTCAGTAGCGCAAACCCTGGAGCACAACTACTTGACCTTCTACTATTTGGTAACAGCATACCTTCTGACTTGATTGCACAAACTACCTTCCTTGACGTTGACCAAGTGAAGAAGGTTAAGGGACGTTTTGGTGGCAGAGGCTAG 729 0.428 MWYQRCIVVDERTNISAQLFPHYLHTKSLYRSFKIKMIYILFLFSLLSFTSNAAVNDFCVADLKGPDSPSGYQCKPPKTVTVDDFVFSGLVAGNTTNTFNAALTSAFVTDFPGVNGLGVSAARLDIAKGGSIPMHTHPAATELLIMVEGKITAGFMTPFAVYTKTLKPGDIMVFPQGQLHFQVNSGKGKATAFLAFSSANPGAQLLDLLLFGNSIPSDLIAQTTFLDVDQVKKVKGRFGGRG 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00406 242 FunFam Auxin-binding protein ABP19a 52 241 - -
Phco1g00406 242 ProSitePatterns Germin family signature. 130 143 IPR019780 GO:0030145
Phco1g00406 242 Pfam Cupin 92 232 IPR006045 -
Phco1g00406 242 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 48 234 - -
Phco1g00406 242 CDD cupin_OxOx 51 238 IPR001929 GO:0030145
Phco1g00406 242 SMART Cupin_1_3 88 232 IPR006045 -
Phco1g00406 242 SUPERFAMILY RmlC-like cupins 54 237 IPR011051 -
Phco1g00406 242 Gene3D Jelly Rolls 51 241 IPR014710 -
Phco1g00406 242 PRINTS Germin signature 197 212 IPR001929 GO:0030145
Phco1g00406 242 PRINTS Germin signature 135 155 IPR001929 GO:0030145
Phco1g00406 242 PRINTS Germin signature 164 184 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00406 Phco-Chr1 3190991 3192190 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00406 1 3190991 3192190 Phco1g00406 1 3190991 3192190 ECH