Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00405 ATGAAGATGATTTACTCTCTTTTCCTTTTCGCTCTTCTCTCATCCATTTCCCATGCTTTTGTCAATGATTTCTGCGTAGCAAATCTAAATGCTCCAGATGGCCCTTCAGGGTATGAGTGCAAGCCACCTAACACAGTGACAGTGGATGACTTTGTGTTCTCTGGTTTTGTAGCTGGAAACACCTCAGGCATTTTCAATGCTGCAATAACCCCCGCATTTGTCACTCAACTTCCAGGTGTGAATGGTCTTGGTTTATCTGTAGCACGATTAGACCTAGCCAAAGGTGGATTTGTTCCATTGCACTCACATACTGCTTCAAGTGAAATACTCATCATGGTGAAGGGTGAAATCACTGCTGGCTTTATAACACCTGCTGCAGCTTATCAAAAGACACTGAAACCAGGAGATATCATGGTTTTCCCACAAGGACTCTTGCATTTCCAAGTGAATTCTGGGAAGGGAAAAGCCACTGCTTATCTTGCTTTCAGTAATCCAAGCCCAGGAGCACAACTACTTGACTTGCTTTTATTCGGCAACAACTTGCCTTCTCAGTTGATTGCCCAAACTACCTTACTTGATTATGCACAAGTGAAGAAGCTCAAGACTCGTTTTGGCGGCAGAGGATAG 627 0.437 MKMIYSLFLFALLSSISHAFVNDFCVANLNAPDGPSGYECKPPNTVTVDDFVFSGFVAGNTSGIFNAAITPAFVTQLPGVNGLGLSVARLDLAKGGFVPLHSHTASSEILIMVKGEITAGFITPAAAYQKTLKPGDIMVFPQGLLHFQVNSGKGKATAYLAFSNPSPGAQLLDLLLFGNNLPSQLIAQTTLLDYAQVKKLKTRFGGRG 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00405 208 SUPERFAMILY RmlC-like cupins 19 203 IPR011051 -
Phco1g00405 208 Pfam Cupin 65 197 IPR006045 -
Phco1g00405 208 Gene3D Jelly Rolls 18 207 IPR014710 -
Phco1g00405 208 PRINTS Germin signature 163 178 IPR001929 GO:0030145
Phco1g00405 208 PRINTS Germin signature 130 150 IPR001929 GO:0030145
Phco1g00405 208 PRINTS Germin signature 101 121 IPR001929 GO:0030145
Phco1g00405 208 CDD cupin_OxOx 17 204 IPR001929 GO:0030145
Phco1g00405 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 14 201 - -
Phco1g00405 208 SMART Cupin_1_3 54 198 IPR006045 -
Phco1g00405 208 FunFam Auxin-binding protein ABP19a 18 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00405 Phco-Chr1 3184233 3184859 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00405 1 3184233 3184859 Phco1g00405 1 3184233 3184859 ECH