Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00399 ATGAGTAACTGGTTGGGGTTCTCTCTGACTCCACACTTGAGGATTGATGAAGAATTTGGGAGAGAAAACCAAGAGCGTGGAGGAGGAGGTGGAGGAGAAGGAGGAGGGTATCATCCTCGTCCTTCTTCTCACCCTCACATGTCTGTTATGCCTTTGCGCTCTGATGGCTCTCTGTGTGTTGCTGAATCCTTCAGCCACTCTGCTGCTCCTCAAGAATGGAGATATGATAGTGCAATAGGTGGAGGGAATTCCAATGAAAAAGGTCCAAAGCTTGAGGACTTTTTGGGCTGCTACTCAAACTCCCCCAATAAAGTCTTTTGTCAAGATTCTCAGCTTGACCAAAACCAAAGCCAGAGCAATGTTTCCAAAATCAATGTTAATGTGGCACCAAGCTTTTGCACCAATGCCGAGATTGAAACTGGGGATTGCCTCACAAACCCTTCTTCCTTGCTTCAATCTTTCCATGCATACAGTGATAACCCACATGCCCTTATCCCGACCAATGGCATGTACAAGTCCTGGTTGGCACAAACTCAGTTTTCTGATGTAAAGCCATCAACTGAGGCAAATGGGTGTAATTTCCAATCACTGTCCCTCACTATGAGCCCCACTGTGCAGAATGGGGTGGGTGCAATTTCCCCTGTTCAAGCTATTGAGGACAATAGGAAACGGGCCATGGCTAAATCTCATGCTAGAGAACCAGTTCCTCGCAAATCTATTGACACTTTTGGGCAGAGAACCTCTCAATACCGTGGTGTTACAAGGCATAGATGGACTGGGAGATATGAGGCCCATTTGTGGGATAACAGTTGCAGAAAGGAAGGGCAAACAAGGAAAGGAAGGCAAGAGAATATACTAACGGTCTGTTTCATGCACTGGTTGGATTCTTCTCCCTTTTTCATGGCTTCTTCAAATCTTCACTCAGTCTACCTTGGTGGTTATGATAAGGAAGAAAAAGCAGCAAGGGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTGGAAGAGATGAAGCACATGACCAGGCAAGAATTTGTCGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGGGCATCTGTGTATAGAGGTGTGACAAGGCACCACCAACATGGAAGGTGGCAGGCCCGAATCGGAAGGGTTGCAGGAAATAAGGACTTGTATCTTGGTACATTCAGTACTCAAGAAGAAGCTGCCGAAGCATACGACATTGCAGCAATCAAGTTCAGAGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGATGTGAAGAGAATCTGCTCAAGTTCCACTCTCATTGCAGGAGATCTTGCAAAACGGTCCCCAAAAAAAGAATCACCAGCTGCTGTTGCTGTGGATGACATCAACACAAGCAGTTCTTCTGTGCCGACTCAGCCACCTCCTTTGGCAATAACTGACGGTGAACATTCTGATGAGTTGTCCAACATGATGTGGAATGGCAATAGTGATGAGCAAGCACATGATGAGAGTGCTAACATCAACAATATCACTGAATCATCGCAGCAAGTTTCTCCAAGCAACAACAAGGTTGGTTTGAACCCTCAAAGTCCCCCCAAGTGTTCTGTGGGGCTACCCAATGAGTTTGGAGTGAGTGGAACAGATTATGGACATGGGTACTTCACCCTGGATGGACCAAAATATGATGATGGGAACAATGAAAACGACCACATGAGCAGCAGCAGGCTTGGAAATATGGGACTTGTTAATCAAGTTCCCATGTTTGCTTTGTGGAATGAATGA 1815 0.4551 MSNWLGFSLTPHLRIDEEFGRENQERGGGGGGEGGGYHPRPSSHPHMSVMPLRSDGSLCVAESFSHSAAPQEWRYDSAIGGGNSNEKGPKLEDFLGCYSNSPNKVFCQDSQLDQNQSQSNVSKINVNVAPSFCTNAEIETGDCLTNPSSLLQSFHAYSDNPHALIPTNGMYKSWLAQTQFSDVKPSTEANGCNFQSLSLTMSPTVQNGVGAISPVQAIEDNRKRAMAKSHAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQENILTVCFMHWLDSSPFFMASSNLHSVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKKESPAAVAVDDINTSSSSVPTQPPPLAITDGEHSDELSNMMWNGNSDEQAHDESANINNITESSQQVSPSNNKVGLNPQSPPKCSVGLPNEFGVSGTDYGHGYFTLDGPKYDDGNNENDHMSSSRLGNMGLVNQVPMFALWNE 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00399 604 SMART rav1_2 249 347 IPR001471 GO:0003700|GO:0006355
Phco1g00399 604 SMART rav1_2 377 441 IPR001471 GO:0003700|GO:0006355
Phco1g00399 604 MobiDBLite consensus disorder prediction 22 51 - -
Phco1g00399 604 SUPERFAMILY DNA-binding domain 307 343 IPR016177 GO:0003677
Phco1g00399 604 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 86 512 - -
Phco1g00399 604 Pfam AP2 domain 376 427 IPR001471 GO:0003700|GO:0006355
Phco1g00399 604 CDD AP2 376 437 IPR001471 GO:0003700|GO:0006355
Phco1g00399 604 MobiDBLite consensus disorder prediction 470 485 - -
Phco1g00399 604 CDD AP2 248 343 IPR001471 GO:0003700|GO:0006355
Phco1g00399 604 FunFam AP2-like ethylene-responsive transcription factor 376 437 - -
Phco1g00399 604 SUPERFAMILY DNA-binding domain 376 437 IPR016177 GO:0003677
Phco1g00399 604 Gene3D AP2/ERF domain 248 343 IPR036955 GO:0003700|GO:0006355
Phco1g00399 604 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700|GO:0006355
Phco1g00399 604 PRINTS Ethylene responsive element binding protein signature 323 343 IPR001471 GO:0003700|GO:0006355
Phco1g00399 604 ProSiteProfiles AP2/ERF domain profile. 377 435 IPR001471 GO:0003700|GO:0006355
Phco1g00399 604 MobiDBLite consensus disorder prediction 456 493 - -
Phco1g00399 604 Gene3D AP2/ERF domain 377 437 IPR036955 GO:0003700|GO:0006355
Phco1g00399 604 ProSiteProfiles AP2/ERF domain profile. 249 341 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00399 Phco-Chr1 3140564 3143851 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco1g00399 AP2 2.3e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00399 1 3140564 3143851 Phco1g00399 1 3140564 3143851 ECH