Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00394 ATGGCGGAAAGCGCATCACCGTCGTCCAAACCCTCACCAATGGACCCTCAAAACCCCGCACCATCCTCCAACCCTACAATCCCTTCCCCTTCCCACAACATGCCTTCACCCTCGCTCCCTCCGCTTCCCCAAGACCACCAACACCAACAACAGCAGCAAAATCTTCATCAACAATTGAGTCCCCCTCAACAACAACAGCCTCTCGTGTCGTCGCAAGCCATGAACACCATCAACGGCATCAACCCTATCTCCAATTTCCAACTCCAGCAGACGCTGCAGCGATCGCCTTCCATGTCGCGCCTCAATCAAATCCAGCCTCAGCAGCAGTCGCAGCAGCAGCAGCAGTTCGGCGTCATGCGCCAGCAGGCCGGATTATACGGCGGACAGATGACCTTCGCCGCCGCGGGCGGCGGAGCGGGCCAGCAGCAGCAGTTGGGCGGCTCCAATTTGTCGCGGTCCGCGCTGATAGGGCAGAGCGGGCACTTCCCCATGTTGTCTAGTGCTGCCACGCAGTTTAACTTGCTCTCCTCGCCAAGGCAAAAAGGCGGGCTAGTTCAGCAGTCTCAATTCTCAGGTAATTCTGCTGGACAATCACTGCAAGGAATGCAAGCAATGGGCATGATGGGATCGCCAAATCTCACCTCACAACTGCGAGCTAATGGAGCCGTGGCTTATGCACAGCAGCTGAGAATGAGTCAGGGTCAAATCAGGCAGCAAATGTCACAGCAGAGTTCACTTAACACTGGACAGGTTCAAGGTTTACCAAGGTCATCATCCCTTGCTTTTATGAATTCTCAGTTGTCTGGGTTGTCTCAGAATGGGCAACAAGCGATGGTTCATAACTCCTTAACACAGCAACAGTGGCTTAAGCAAATGCCGGCAATGTCTAGCCCTGCCTCACCATTGCGTCTTCAACAGAGGCAGCAGCTGGCTTCTTCTACTCAATTGCAACAAAATATAAGCCTGAACCAACAACAATTGTCCCAGCTGATTCAGCAACAGAAGATAGGGCAGCCTCAGCTGCATCAGCAGCAACAACAGCAGCAGCCTCAGCAGCTGCAACAGCAGCTCATACATCAGCAGCCACAACAGCAGTCTCAGCCACAGGCTTCTGTTCATCAACAGCAACAGTCTCCAAGGATGCCAGGACCTGCAGGCCAAAAGTCATTCAGTCTAACAGGATCACAGCCAGATGCTACCGCATCTGGTGCAACTACACCAGGTGGTAGTTCTAGCCAAGGAACTGAAGCAACAAACCAAGTCCTTGGGAAGAGAAAGATACAGGATTTAGTTGCACAGGTGGATCCACAAGGTACACTGGACCCCGAAGTTATAGATCTTCTTTTAGAGCTTGCTGATGACTTCATTGATTCTACAACTACACACGGTTGCATTTTGGCAAAACATAGAAAATCGCCGACTTTGGAGTCCAAGGATTTATTGCTACACCTAGAGAAAAATTGGGATTTAACAGTTCCCGGATATTCAAGTGAAGAGAAGAAGTATCAAAGCAAACCTCAACTAAATGACGTCCACAAGAGACGCCTAGATATGATTCGCACATTGATGGAATCTTCGGCCTCTGAGTCAAATATTAGCAGTTCTAAAGAGTTGAGTAGACAGGGCATTTCTAATCCTACCCCTGTGGGAGCTCACCATCTAGTAAGACCCTTGAGTTCAGAGCAATTGGTTTCTCATGCAGCTGGTTCTCAAATGCTACAGCAGATGACAAGGTTTTAA 1740 0.5023 MAESASPSSKPSPMDPQNPAPSSNPTIPSPSHNMPSPSLPPLPQDHQHQQQQQNLHQQLSPPQQQQPLVSSQAMNTINGINPISNFQLQQTLQRSPSMSRLNQIQPQQQSQQQQQFGVMRQQAGLYGGQMTFAAAGGGAGQQQQLGGSNLSRSALIGQSGHFPMLSSAATQFNLLSSPRQKGGLVQQSQFSGNSAGQSLQGMQAMGMMGSPNLTSQLRANGAVAYAQQLRMSQGQIRQQMSQQSSLNTGQVQGLPRSSSLAFMNSQLSGLSQNGQQAMVHNSLTQQQWLKQMPAMSSPASPLRLQQRQQLASSTQLQQNISLNQQQLSQLIQQQKIGQPQLHQQQQQQQPQQLQQQLIHQQPQQQSQPQASVHQQQQSPRMPGPAGQKSFSLTGSQPDATASGATTPGGSSSQGTEATNQVLGKRKIQDLVAQVDPQGTLDPEVIDLLLELADDFIDSTTTHGCILAKHRKSPTLESKDLLLHLEKNWDLTVPGYSSEEKKYQSKPQLNDVHKRRLDMIRTLMESSASESNISSSKELSRQGISNPTPVGAHHLVRPLSSEQLVSHAAGSQMLQQMTRF 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00394 579 CDD TAF12 422 490 IPR003228 GO:0005669|GO:0006352
Phco1g00394 579 FunFam Transcription initiation factor TFIID subunit 12 417 492 - -
Phco1g00394 579 MobiDBLite consensus disorder prediction 95 115 - -
Phco1g00394 579 MobiDBLite consensus disorder prediction 12 42 - -
Phco1g00394 579 MobiDBLite consensus disorder prediction 43 70 - -
Phco1g00394 579 Gene3D Histone, subunit A 417 491 IPR009072 GO:0046982
Phco1g00394 579 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12 11 532 IPR037794 GO:0000124|GO:0005669|GO:0046695
Phco1g00394 579 MobiDBLite consensus disorder prediction 1 70 - -
Phco1g00394 579 Pfam Transcription initiation factor TFIID subunit A 423 490 IPR003228 GO:0005669|GO:0006352
Phco1g00394 579 MobiDBLite consensus disorder prediction 341 421 - -
Phco1g00394 579 SUPERFAMILY Histone-fold 420 491 IPR009072 GO:0046982
Phco1g00394 579 MobiDBLite consensus disorder prediction 291 310 - -
Phco1g00394 579 MobiDBLite consensus disorder prediction 525 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00394 Phco-Chr1 3087662 3095951 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00394 1 3087662 3095951 Phco1g00394 1 3087662 3095951 ECH