Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00293 ATGACGCCACGACAAGCTATTAACGACTTAAGAAAGGTCCAGGCCAGTGTGTCCATGTTGGAATCTCATCTCCAAGAAATGGGAAGAAAGCTTCTGCTTCTCCTCCATGTGGATTGGAAACAACAACTTTATGTTGAAGGGGAAGCCTCAACTGATTCTCCGTTGGTTCATATGCCAAGGCTCAAAGTTCTATACTTGGAAAAGAAAAAAGACCTTGAACAAAGCTTCAAAGGTATTACAGCTGTGGAGGAAACTCCTAAGCTCCTCCATGGAACAATTGAAGCTACCATCTTCAATGCCTCACCTTACTCACCTTTACTTCCCTTCAACTGCTTATGTACAAATGGAAAGCCTGCTTATGTGACTATAAAGATAGACAACCAGAAGTTTGCAGAAACAAGTGAAGAAAGCAACCGTGTGTGGAACCAAACCTTTCAGATTCAATGTGCTCATCCAGCTGATTCATGCATCACCATTACACTGAAAACATCACGTTCTTCCATATTGGGGAAGTTCCATATTCAGGCTCAGCAGCTATTGAAGAAGGGAGGTTTGATCAACGGGTTATTCCCTCTCCTCATGGATAATGGAAAACCAAACCCAAAACTTAAATTGAAGTTTATGCTATGGTTCAAGCCAGCAGATTTGGAACCAAGTTGGGCAAAGATGTTGAGCAATGACTGGGAATTTCAAGGGCTGAAGGAGGCTAGCTTCCCACTAAGGTCCAATTGTCAGGTTAAACTTTATCATGATGCTCACCATTCTTCAGCTTTTCAACCTCCCTTTGATCTATGTGGAGCTCCAAAGAAGCTATGGGAGGATGTTTATAAAGCAATTGAGGGTGCAAAGTACTTAGTTTATATTGCAGGCTGGTTCTTCAATCCCATGATGGTTCTGGTTAGAGATCCTCACACAGAAATCCCACATGCCAGAGGAATTAAGTTAGGTGACCTATTAAAGAAGAAGGCAGAGGAAGGAGTGGCTGTGAGGGTTATGCTTTGGGATGATGAAACATCTTTACCCTTTGTTAAGAACAAAGGTGAATTGAACAACCAAGATGAGGAAGCTTTTTCCTTTTTCAATCACACAAAAGTCATATGCAGAAAGTGTCCAAGATTTCACCATATGTTCCCCACACTCTTTGCTCACCATCAGAAGACTATAACAGTGGACACAAAAGCACCCAAATCTGTTGATGACAGAGAGCTTATGAGCTTTGTGGGTGGGTTGGATTTGTGTGATGGAAGATATGACACAGAGCAGCATTCATTGTTTCAAACACTCATGAGGGAATCTCATTGCTATGACTTCTACCAAAAAAGCATTGAAGAAGCTAGCCTCAACAAAGGAGGGCCAAGGGCACCTTGGCATGATGCTCATGCCTGTGTTACTGGTGAGGCTGCTTGGGATGTGTTAACAAATTTTGAGCAAAGATGGACAAAGCAATGTGATCCTTCTTTTCTAATCCCTTCTAGCACCTTGGCAAATCTTATGCCTAGGACAAGCTCAAGCACTCCTACGGAGAGGAATTGGAAAGTTCAAATATACAGGTCAATTGACCATATCTCAGTTGGTGAGTTGTCTACAAAGTCAACTGTGGAGAGGAGCATCCATGAAGCTTATGTTGAAGCAATTAGGCGTGCTGAAAAGTTTATATACATTGAAAGCCAATATTTCATTGGGGGATGCCATTGGTGGAAGAAAGATAGGCACTGTGGCTGCACTAATCTGATTCCCATTGAAATTGCACTGAAGGTGGTAAGTAAGATTAAGGCAAAGGAGAGATTTGCTGTGTACATAGTCATACCAATGTGGCCAGAAGGAGAGCCTGAAAGTGAACCTGTTCAAGATATACTGCATTGGACTAGAGAAACAATGGCAATGATGTATAGGCTGATTGGAGAAGCATTACAAGAAAGTAGACAACCAGGACACCCTAGAGACTATTTGAATTTCTTCTGTCTTGCAAACAGGGAGCAGAAGGGACCAGGGGAGTATCTTCCTCTAGATTCACCCAAACCTGAAACACAATACTGGAATGCTCAAAAAAATAGGAGATTCATGGTTTATGTTCACTCCAAGTTCATGATAGTGGACGACCTATACATATTGATAGGATCAGCTAATGTAAACCAAAGATCGATGGATGGACATAGGGACACTGAGATTGCAATAGGATGCTACCAGTCTCAAGATGGAGATGATGATAACCACCAAATGAGCCTAGATGATATTCAAGCATATAGAATGTCTCTATGGTATGAGCACACAATGAGTGTTGATGAACTGTTCTTGGAGCCAGAGAGATTGGAATGTGTGGAGAGAATGAGATCAATAGGAGATGAAATGTGGGAAATCTATAGCAGTGAAGAAATTAAAGACATGGAAGGTGTGCACCTTGTGACTTACCCTGTGAGAGTAACACCAGAAGGATATGTGAAGGACCTCACTGATGGAGTTCATTTCCCTGATACAAATTCTCTTGTGAAAGGCAAAAGGTCTAAAATATTGCCCCCTATCTTCACCACTTAG 2532 0.4186 MTPRQAINDLRKVQASVSMLESHLQEMGRKLLLLLHVDWKQQLYVEGEASTDSPLVHMPRLKVLYLEKKKDLEQSFKGITAVEETPKLLHGTIEATIFNASPYSPLLPFNCLCTNGKPAYVTIKIDNQKFAETSEESNRVWNQTFQIQCAHPADSCITITLKTSRSSILGKFHIQAQQLLKKGGLINGLFPLLMDNGKPNPKLKLKFMLWFKPADLEPSWAKMLSNDWEFQGLKEASFPLRSNCQVKLYHDAHHSSAFQPPFDLCGAPKKLWEDVYKAIEGAKYLVYIAGWFFNPMMVLVRDPHTEIPHARGIKLGDLLKKKAEEGVAVRVMLWDDETSLPFVKNKGELNNQDEEAFSFFNHTKVICRKCPRFHHMFPTLFAHHQKTITVDTKAPKSVDDRELMSFVGGLDLCDGRYDTEQHSLFQTLMRESHCYDFYQKSIEEASLNKGGPRAPWHDAHACVTGEAAWDVLTNFEQRWTKQCDPSFLIPSSTLANLMPRTSSSTPTERNWKVQIYRSIDHISVGELSTKSTVERSIHEAYVEAIRRAEKFIYIESQYFIGGCHWWKKDRHCGCTNLIPIEIALKVVSKIKAKERFAVYIVIPMWPEGEPESEPVQDILHWTRETMAMMYRLIGEALQESRQPGHPRDYLNFFCLANREQKGPGEYLPLDSPKPETQYWNAQKNRRFMVYVHSKFMIVDDLYILIGSANVNQRSMDGHRDTEIAIGCYQSQDGDDDNHQMSLDDIQAYRMSLWYEHTMSVDELFLEPERLECVERMRSIGDEMWEIYSSEEIKDMEGVHLVTYPVRVTPEGYVKDLTDGVHFPDTNSLVKGKRSKILPPIFTT 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00293 843 SUPERFAMILY Phospholipase D/nuclease 238 489 - -
Phco1g00293 843 Gene3D C2 domain 91 212 IPR035892 -
Phco1g00293 843 SMART pld_4 379 416 IPR001736 GO:0003824
Phco1g00293 843 SMART pld_4 687 714 IPR001736 GO:0003824
Phco1g00293 843 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 88 207 IPR035892 -
Phco1g00293 843 Gene3D Endonuclease Chain A 527 734 - -
Phco1g00293 843 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 687 714 IPR001736 GO:0003824
Phco1g00293 843 PIRSF PLD_plant 80 843 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Phco1g00293 843 SUPERFAMILY Phospholipase D/nuclease 510 767 - -
Phco1g00293 843 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 379 416 IPR001736 GO:0003824
Phco1g00293 843 PANTHER PHOSPHOLIPASE D 88 825 IPR015679 -
Phco1g00293 843 Pfam C2 domain 119 192 IPR000008 -
Phco1g00293 843 Gene3D Endonuclease Chain A 257 510 - -
Phco1g00293 843 Pfam Phospholipase D C terminal 761 832 IPR024632 -
Phco1g00293 843 Pfam Phospholipase D Active site motif 380 416 IPR001736 GO:0003824
Phco1g00293 843 Pfam Phospholipase D Active site motif 690 714 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00293 Phco-Chr1 2142326 2150752 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00293 1 2142326 2150752 Phco1g00293 1 2142326 2150752 ECH