Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00292 ATGACAACAACCTACGGCACGATTCCCACCTCGGGGCCTCCGAACCTGGAATACATATCGCGTGCCAAGCAGCGGATCAAGGCGGGGTTGGGGACAAGGCGGCCGTGGAAGGCCATGCTGAACTTCCGATCGCTGAAGATCCCCGGTGGCGGCGCGGCGGAGGCGCTGTTGCGCGTGGCGGTGAACGTGTCGTATTTCCGCATGAACTACGCGATGGTGGCGCTGCTGATTCTCTTCCTGAGCCTCCTCTGGCACCCCATCTCGCTCATCGTCTTCCTCCTCCTCATGGCGGCATGGCTCTTCCTTTACTTCCTCCGTGACGAGCCCCTCGTCCTGCTCGGCCACCTCGTCGACGACCGCCTCGTGCTCGTCGCCATGGCCGTCCTCACAGTGGCGCTGCTGCTGCTCACAGACGCCACCGTCAACATTCTCGTGGCCGTGGCGATCGCCGTGGTGGCGGTGGTGGCGCACGCCGCATTCCGGAGGACGGAGGATCTGTTCTTGGGGGAAGAGGAAGAAGCTGCGGCGGCGGCCTTGGCTGCTACCACCGGCGGTTTCCTCCGTCAACATCTTCGCAGACTTCACCGGCGTCCACCATTGCCGCCGAATACGACGGCGCGTATGGCTCAGCCGCCCTTCGATCCGTACTACCTGTACCAACAAGATGATCGGAGCAACATCAACACGCTCTTCGTGTCGGGGCTCCCGGACGACGTGAAGGCGCGTGAGATTCACAACCTCTTTCGCCGCCGCCCCGGCTTCGACTCTTGCCAACTCAAGTACACCGGCCGCGCCAACCAGGTCGTGGCGTTTGCCACGTTTTTCAACCACCAATCGGCAATGGCAGCGCTGCACGCCTTGAATGGTGTGAAATTTGATCCTCAAACTGGATCTGTTTTACATATTGAACTGGCCAGGTCAAACTCTAGGAGAAAGCGAAAACCAGGCAGTGGAGCCTATGTGGTTATAGATAAAAGGACAAAAGGGGAGCTTGATGTCCATGGATCATCAAGTGATGATGGTGACAGTGACCCTGATGAACCATCAGACAGTGACGGCAACCATGGTGATTTATCCATCATAGCAAGTGACGAGACGGCCATTGGTTCTGACAATCCTATACCCGTGGAGCAACATGAAAAGGGCAGTGCTGGAGGACTGTGTTCCACTCTCTTTATCGCAAATCTTGGCCCAAACTGCACTGAAGATGAATTAAAGCAGGCCTTTTCTGCATATGCTGGATTCAACATGGTCAAAATGCGCTCTAGAGGAGGAATGCCAGTTGCATTTGCTGATTTTGAGGAAATTGATCAAGCTGCTAAGGTCGTGGAGGAGCTTCAGGGAAGCTTGCTTCCATCATCAGATCGGGGTGGCATGCATATAGAATACGCAAGGTCTAAAATGAGGAAGCATTAG 1416 0.5607 MTTTYGTIPTSGPPNLEYISRAKQRIKAGLGTRRPWKAMLNFRSLKIPGGGAAEALLRVAVNVSYFRMNYAMVALLILFLSLLWHPISLIVFLLLMAAWLFLYFLRDEPLVLLGHLVDDRLVLVAMAVLTVALLLLTDATVNILVAVAIAVVAVVAHAAFRRTEDLFLGEEEEAAAAALAATTGGFLRQHLRRLHRRPPLPPNTTARMAQPPFDPYYLYQQDDRSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAALHALNGVKFDPQTGSVLHIELARSNSRRKRKPGSGAYVVIDKRTKGELDVHGSSSDDGDSDPDEPSDSDGNHGDLSIIASDETAIGSDNPIPVEQHEKGSAGGLCSTLFIANLGPNCTEDELKQAFSAYAGFNMVKMRSRGGMPVAFADFEEIDQAAKVVEELQGSLLPSSDRGGMHIEYARSKMRKH 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00292 471 SMART rrm1_1 229 300 IPR000504 GO:0003723
Phco1g00292 471 SMART rrm1_1 390 462 IPR000504 GO:0003723
Phco1g00292 471 FunFam RNA-binding protein with multiple splicing 381 471 - -
Phco1g00292 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 307 IPR000504 GO:0003723
Phco1g00292 471 MobiDBLite consensus disorder prediction 331 358 - -
Phco1g00292 471 Pfam PRA1 family protein 30 170 IPR004895 -
Phco1g00292 471 Gene3D - 387 471 IPR012677 -
Phco1g00292 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 293 IPR000504 GO:0003723
Phco1g00292 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 391 452 IPR000504 GO:0003723
Phco1g00292 471 SUPERFAMILY RNA-binding domain, RBD 228 451 IPR035979 GO:0003676
Phco1g00292 471 Gene3D - 223 310 IPR012677 -
Phco1g00292 471 PANTHER PRENYLATED RAB ACCEPTOR 1-RELATED 1 173 IPR004895 -
Phco1g00292 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 389 466 IPR000504 GO:0003723
Phco1g00292 471 FunFam RNA-binding protein with multiple splicing 2 225 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00292 Phco-Chr1 2137129 2141484 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00292 1 2137129 2141484 Phco1g00292 1 2137129 2141484 ECH
Phco10g01825 10 40542712 40543281 Phco1g00292 1 2137129 2141484 PCT