Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00289 ATGATGATGATGATGATCTTTAATGGATACGCAGATGATTTCTCATGGATTTGTCTGAAGAATTTTCAGTTCACTTCTCTCTGTTCCCAAAGGACCACAATAGACGCAATAAATCTAATTTTCGTCTGTGTTTTCTATGCTTCTACGATTGTCAGTTTAATCAGAAGAAATTTTATAAATGGAAGTCATAGCAGAAGCAAGTTTTTCCTTATTGTCTCTATCTGTTGTGCTATCACTAGCATCGCGTTTTACAGTATTGGCTTGTGGAATCTCATTGCCAAAACCGGTAACTCCATGGCTAACTTAGCATGCATGGTAAGAGGATTTGTTTGGACTTCTTTGGCAGTTTCATTGCTTGTTCAGGGACACAAATGGATCAAAATTCTAAACTCTGTCTGGTGGGCATGTTCCTGTGCACTAGTTTCATCTCTCGACATTGAAACTCTGTTCAGAAAGCATGCAATAGAAATTTTCGATGTCCTACTATGGCTCTTGCACACACTTCTTCTCTTCTGTGCCTTCCAAAATCTTGGTTACTTTGTCACTCAAAGTGTGTCAAAAAGTTTGTCTGAGCCATTGTTAGCTCAGGAATTTGACACAGAAGAAACAGGACTAGGCCGTGCTTCCTTTCTGAGCAAGTTGACCTTCTCTTGGGTTAACTCCTTACTCAGTCTGGGTTACTCAAAGCCACTATCTCTTGAAGACATCCCTTCCCTTCTCTCTGAAGATAAAGCAGATTTGTCCCACCAAAACTTCATGCATGCATGGGAATCCCTTGTGTGTGAGAGAAGCAAGAACAATAACAAGAACTTGGTGCTTTGGTCCATTGTTAGAACTCACTTAAAAGAGAACGTATTAATAGCTTTTTATGCTTTACTCAGAACCATTGCTGTGGCTGTTTCTCCTTTAATACTCTATGCTTTTGTCAACTTTTCAAATGGTAGGGATAGTGAGGATACAGATCTCAAAGAAGGTCTTACCATAGTGGGTTTTCTTATTCTCTCCAAAGTGGTTGATTCTTTGTCCCAGAGACATTGGTTTTTTCATTCCAGGAGATTAGGATTGAAGATGAGATCAGCTCTGATGGTGGCAGTGTATAAAAAACAACTAAAGCTTTCAAGCTCAGGTAGGACAAGACACTCCACAGGTGAAATTGTTAATTACATTGCAGTTGATGCATATCGCATGGGAGAATTTCCATGGTGGTTTCATGTAACATGGGCATGTACATTGCAACTTTTCCTATCTATAGGTATCCTTTATGGAGTTGTGGGAGTGGGTGCTCTTCCTGGTTTAGTCCCTCTTCTTATATGTGGACTTCTCAATGTACCATTTGCCAAGATCCTACAAAAATGCATGGCACAGTTCATGATTTCACAGGATGAGCGTCTTAGAACAACATCAGAAATTCTAAACACCATGAAAATCATTAAGTTACAGTCCTGGGAAGACAAATTCAAGAGTTTGGTTGAGAACCTACGTGCGAAAGAGTTCATTTGGCTATCTAAGGCACATATCATGAAAGCTTATGGGTCATGTTTATATTGGATGTCTCCTACCATCGTTTCTGCTGTTGTTTTCCTCGGTTGTGCTGCTTTCAATAGTGCTCCATTGAATGCTGGGACCATTTTTACAGTTCTTGCAACGTTGAGGAACCTGTCAGAACCTGTTCGAATGATTCCGGAGGCTCTATCTATTATGATCCAAGTTCAGGTATCTTTTGATCGTCTCAATACCTTTTTGCTCGATGAGGAACTGGATACCAGTGATGATAACAGAAGACATATAAGCCGAAGTTCAATTAATGCGGTAGAAATCCAAGGTGGCAACTTCATTTGGGACCATGAATCAGTGTCCCCAACTTTAAGAGATGTGAATTTAGAAATCAAATGGGGACAGAAAGTTGCAGTTTGTGGGCCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCAGTACTGGGAGAGATTCCCAAGATCTCAGGAACTGTTAATGTGTCCAGCAACATAGCATATGTTTCTCAAACCTCTTGGATACAAAGTGGGACGGTTCAAGATAATATACTCTTTGGCAAGCCGATGGAAAAAACAAGATATGAGAGTGCCATTAAAGTTTGTGCTTTGGATAAAGATATCAATGATTTTAGCCACGGTGATCTTACAGAAATAGGGCAGCGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTGGCTCGTGCTGTTTACAACGATGCTGACATTTATCTCCTCGATGACCCTTTCAGTGCAGTTGATGCTCACACTGCTGCTATCCTTTTCAAAGACTGCGTAATGACGGCTCTAAGAGAGAAAACAGTCATTCTAGTGACACATCAAGTGGAGTTTCTCTCAGAAGTTGATGCAATCCTGGTGATGGAAGGTGGAAAAGTTACTCAATCAGGTAATTATGAGAATCTCTTAACAGCTGGGACTGCCTTTGAACAACTCGTGAGCGCGCATAAGGAAGCAATTACAGAGTTGGATCAGAATAATGAGGACAAAACTCAGAGAGAAGAGTCTGAAGGTGTTTATCTAACTAAAAATCAAAGTGAGGGGGAGATTTCTACCGAGGGTCAACTTGGGATACAGCTTACACAAGAAGAAGAAAAAGAGATTGGTGATGTTGGCTTGAAGACATTATGGGATTATATTTCATTTTCCAGGGGTTCATTGATGCTGTCATGGATACTTTTGACACAATTTGCTTTTATTGCTTTGCAGACTGCATCAATGGTTTGGCTTGCTTTAGCCATAGAAATTCCAAAAATAACTAGTGCCACCTTGATTGGGGTGTACTCTTTAATCTCATTTGCTAGTGCTGCGTTTATATATGTAAGGTCTCTCTTGACCTCTTACCTCGGATTAAAAGCTTCTAAAGCTTTCTTCACAAGTTTCAATACTGCTATCTTCAATGCTCCTATGCTGTTCTTTGACTCAACCCCTGTAGGAAGGATTTTAACGAGAGCTTCATCAGATTTAAGTACTTTGGACTTTGATATACCTCATTCGATCACCTTTGTAGCATCTGTAGCAATTGAATTTTTGGCGACTATTTGTGTAATAGTTTTAGTAACATGGCCAGTTCTCATTGTTGCCATTCCTGCAATAGTTGCATCAAAATATGTTCAGGGATATTATCAAGCCTCGTCAAGGGAGTTGATGAGGATCAATGGAACCACAAAAGCTCCTGTCATGAATTTTGCAGCTGAGACATCACTTGGTGTGGTTACTGTGAGAGCATTTAATATGGAAGAAAGATTTTTAAAGACTTACTTAAAGCTTGTGGACACAGACGCAACACTGTTTTTTCATTCTAATGTGGCCATGGAATGGTTAGTTTTAAGGATTGAAGCACTTCAAAATTTCACAGTCATCACTTCAGCTTTGCTACTTATTCTATTTCCTCAGGGATACGTGTCCATAGGCCTTGTGGGACTATCTCTCTCTTATGCTTTAACCTTGACAGGAACCTACACATTTTGGACTCGATGGTATTGCAATTTATTAAACAATGTTATATCTGTTGAAAGAATCAAGCAATTCATTCACCTACCATCAGACCCTCCTGCCATTGTGAAGGACCACCGACCTCCATCTTCATGGCCTTCCAAAGGCAGGATTGACCTTCAAGCGTTAGAGATTAGATATCGTCCTAATGCTCCGTTAGTACTCAAGGGTATCACTTGTATGTTTAGAGAAGGGAGTAGAGTGGGAGTTGTGGGAAGAACCGGAAGTGGAAAAAGTACACTCATAAGTGCTTTGTTTCGCTTAGTTGAGCCAGCAAGGGGTGATATTCTTATAGATGGGATTAGCATATGCTCAATGGGGTTGAAGGATTTGAGAATGAAACTAAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGAACCAACTTGGACCCTTTAGGCCTGTACTCAGATGATGAGATATGGAAGGCTTTGAAGAAATGCCAGCTTAAGGAAACTATCAGCCATCTACCAAATCTCTTAGACTCTTTGGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGACAACGGCAACTGTTTTGTCTAGGAAGAGTACTGCTTAAGAGGAACAGAATTCTTATTCTGGATGAAGCTACAGCCTCCATTGACTCTGCCACTGATGCAATTCTACAAAGAATTATCAGACAAGAGTTTGCAGAATGCACAGTTATAACAGTGGCTCACAGGGTTCCAACTGTAATAGACAGTGACATGGTTATGGTCCTCTCCTATGGGAAAGTGGTGGAATATGATGAACCTTCAAGATTAATGGACACCAACTCTTCATTCTCTAAGCTGATAGCTGAATATTGGGCCAGCTGCAGCAAGAATTCCTCCTCAAATGTTAAGAGCCGCCGCACGCACTCCGCCACAGCCTCCTCCGTGACGCGACGAGTCCCTCCGCGCCGCAACATCCTCCGATACTACGGGCCTCCTCCGCCCCGCGACAGCGTCGAAGGAATGACGGAGAGAAAAGAAGTGGTTGGGTTATCGTGGCAGCCACGGTTGTGTATTCCATTATCATCAAAAGTCACTGATGGTTCTCATACCAAACCTCAAACGGAGGCATCAAACAACACTCTTTGGAAATCCAGTTCAGAGCTGATTGATGGCCTTTTCGTCCCTCCAAACAATCCCAGAAAATTAAACAAGTTACTGAAAAAGCAAGCTAAAGATACTGCAGGGAAAAATTGGTTCAATATGCCGGCCCAAACCATCACCCCTGAGCTACAAAAAGATTTGAAATTGTTGAAGTTGAGGGCTGCTCTTGATCCAAAGCGTCATTACAAGAAAGGTGATTCCAAATCAAAGACACTTCCCAAATATTTCCAGGTTGGGACAGTTGTGGATTCTCCATTGGACTTCTTCTCAGGAAGATTAACAAAGAAGGAAAGGAAAGCAACGCTTGCAGATGAGCTGCTTTCTGATCAAAACCTTGCAGCCTATAGGAAACGGAAGGTTCAAGAAATTGAAGAAAAAAATCGACCAGGGGGGAATGAAAGGTGGAAGATTAAAGGTAGCAATTCCCGGAAGCGGGCTAAGGAAAGGAGGATTTACTGA 5100 0.4137 MMMMMIFNGYADDFSWICLKNFQFTSLCSQRTTIDAINLIFVCVFYASTIVSLIRRNFINGSHSRSKFFLIVSICCAITSIAFYSIGLWNLIAKTGNSMANLACMVRGFVWTSLAVSLLVQGHKWIKILNSVWWACSCALVSSLDIETLFRKHAIEIFDVLLWLLHTLLLFCAFQNLGYFVTQSVSKSLSEPLLAQEFDTEETGLGRASFLSKLTFSWVNSLLSLGYSKPLSLEDIPSLLSEDKADLSHQNFMHAWESLVCERSKNNNKNLVLWSIVRTHLKENVLIAFYALLRTIAVAVSPLILYAFVNFSNGRDSEDTDLKEGLTIVGFLILSKVVDSLSQRHWFFHSRRLGLKMRSALMVAVYKKQLKLSSSGRTRHSTGEIVNYIAVDAYRMGEFPWWFHVTWACTLQLFLSIGILYGVVGVGALPGLVPLLICGLLNVPFAKILQKCMAQFMISQDERLRTTSEILNTMKIIKLQSWEDKFKSLVENLRAKEFIWLSKAHIMKAYGSCLYWMSPTIVSAVVFLGCAAFNSAPLNAGTIFTVLATLRNLSEPVRMIPEALSIMIQVQVSFDRLNTFLLDEELDTSDDNRRHISRSSINAVEIQGGNFIWDHESVSPTLRDVNLEIKWGQKVAVCGPVGAGKSSLLYAVLGEIPKISGTVNVSSNIAYVSQTSWIQSGTVQDNILFGKPMEKTRYESAIKVCALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFKDCVMTALREKTVILVTHQVEFLSEVDAILVMEGGKVTQSGNYENLLTAGTAFEQLVSAHKEAITELDQNNEDKTQREESEGVYLTKNQSEGEISTEGQLGIQLTQEEEKEIGDVGLKTLWDYISFSRGSLMLSWILLTQFAFIALQTASMVWLALAIEIPKITSATLIGVYSLISFASAAFIYVRSLLTSYLGLKASKAFFTSFNTAIFNAPMLFFDSTPVGRILTRASSDLSTLDFDIPHSITFVASVAIEFLATICVIVLVTWPVLIVAIPAIVASKYVQGYYQASSRELMRINGTTKAPVMNFAAETSLGVVTVRAFNMEERFLKTYLKLVDTDATLFFHSNVAMEWLVLRIEALQNFTVITSALLLILFPQGYVSIGLVGLSLSYALTLTGTYTFWTRWYCNLLNNVISVERIKQFIHLPSDPPAIVKDHRPPSSWPSKGRIDLQALEIRYRPNAPLVLKGITCMFREGSRVGVVGRTGSGKSTLISALFRLVEPARGDILIDGISICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKALKKCQLKETISHLPNLLDSLVSDEGGNWSLGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIRQEFAECTVITVAHRVPTVIDSDMVMVLSYGKVVEYDEPSRLMDTNSSFSKLIAEYWASCSKNSSSNVKSRRTHSATASSVTRRVPPRRNILRYYGPPPPRDSVEGMTERKEVVGLSWQPRLCIPLSSKVTDGSHTKPQTEASNNTLWKSSSELIDGLFVPPNNPRKLNKLLKKQAKDTAGKNWFNMPAQTITPELQKDLKLLKLRAALDPKRHYKKGDSKSKTLPKYFQVGTVVDSPLDFFSGRLTKKERKATLADELLSDQNLAAYRKRKVQEIEEKNRPGGNERWKIKGSNSRKRAKERRIY 1699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00289 1699 Coils Coil 825 845 - -
Phco1g00289 1699 Gene3D - 611 857 IPR027417 -
Phco1g00289 1699 Pfam ABC transporter 622 756 IPR003439 GO:0005524
Phco1g00289 1699 Pfam ABC transporter 1232 1380 IPR003439 GO:0005524
Phco1g00289 1699 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1217 1449 IPR003439 GO:0005524
Phco1g00289 1699 ProSitePatterns ABC transporters family signature. 729 743 IPR017871 GO:0005524|GO:0016887
Phco1g00289 1699 FunFam ABC transporter C family member 3 1198 1449 - -
Phco1g00289 1699 MobiDBLite consensus disorder prediction 1670 1699 - -
Phco1g00289 1699 MobiDBLite consensus disorder prediction 835 856 - -
Phco1g00289 1699 CDD ABC_6TM_ABCC_D1 286 577 IPR044746 GO:0140359
Phco1g00289 1699 CDD ABC_6TM_ABCC_D2 897 1190 IPR044726 GO:0140359
Phco1g00289 1699 Gene3D ABC transporter type 1, transmembrane domain 868 1195 IPR036640 GO:0005524|GO:0016020
Phco1g00289 1699 Gene3D ABC transporter type 1, transmembrane domain 262 585 IPR036640 GO:0005524|GO:0016020
Phco1g00289 1699 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 903 1164 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phco1g00289 1699 FunFam ABC transporter C family member 10 268 585 - -
Phco1g00289 1699 SUPERFAMILY ABC transporter transmembrane region 888 1197 IPR036640 GO:0005524|GO:0016020
Phco1g00289 1699 MobiDBLite consensus disorder prediction 1670 1686 - -
Phco1g00289 1699 FunFam Multidrug resistance protein associated1 582 847 - -
Phco1g00289 1699 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 207 1456 - -
Phco1g00289 1699 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 602 826 IPR027417 -
Phco1g00289 1699 CDD ABCC_MRP_domain2 1213 1433 - -
Phco1g00289 1699 Gene3D - 1198 1449 IPR027417 -
Phco1g00289 1699 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 606 827 IPR003439 GO:0005524
Phco1g00289 1699 FunFam ABC transporter C family member 5 865 1196 - -
Phco1g00289 1699 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1205 1448 IPR027417 -
Phco1g00289 1699 MobiDBLite consensus disorder prediction 1458 1477 - -
Phco1g00289 1699 Pfam Fcf2 pre-rRNA processing 1571 1666 IPR014810 -
Phco1g00289 1699 CDD ABCC_MRP_domain1 604 804 - -
Phco1g00289 1699 MobiDBLite consensus disorder prediction 835 849 - -
Phco1g00289 1699 Pfam ABC transporter transmembrane region 286 549 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phco1g00289 1699 Pfam ABC transporter transmembrane region 933 1165 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phco1g00289 1699 SMART AAA_5 631 804 IPR003593 GO:0016887
Phco1g00289 1699 SMART AAA_5 1241 1434 IPR003593 GO:0016887
Phco1g00289 1699 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 285 569 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phco1g00289 1699 SUPERFAMILY ABC transporter transmembrane region 273 585 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00289 Phco-Chr1 2101731 2110421 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00289 1 2101731 2110421 Phco1g00289 1 2101731 2110421 ECH