Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco1g00273 | ATGGGTAGCTCGGGAAAGTCGAACGTGAACGGAATCGATGCGTCGGTGGGTGGGTTGGTTTGGGTTCGACGAAGAAACGGGTCATGGTGGCCGGGTCGGATATTGGGTCTTCACGAATTGTCGGAGAGTTGCTTGGTTTCTCCGAGATCGGGTACTCCCGTCAAGCTCTTAGGTCGTGAGGATGCAAGCGTGGATTGGTATAATCTTGAAAAATCAAAGCGGGTAAAAGCTTTTCGCTGTGGAGAGTATGATGAATGCATTGAGAAGGCAAAGGCATCAGCTGCTAATTCAAACAAGAAGGCAGTGAAGTATGCTCGCAGGGAAGATGCCATTCTTCATGCTCTTGAGCTAGAGAGTGCTCACCTGGACAAAGAATCATTAAGCTTATGCTCTGGATTAGATAAACCTGGTAGTGAACATGGAGGATCAGCTGGGGAATTACCACTCATGTCTAATTCTGAAGATGTGACCGGTGATCTGAGTGACTCTGATGACAATTCTAATTCAGCCCCAGAATTGTCACAATCTGTTATATCTTTTGAAGTGCCTAATCACAATGGTTCTTTAAAGATGCATTCAGTGCAAGGAAGGAGGAGAAGAACACCTAATGATTCAGAAGATGATGGATCTGAAGGAGTCAAACGAATGAGAGGACTTGAGGACTTGGGCATTGGTGTAGTGTCAAAGAAAAAGGTCCAAGGTACAGGTGCAACTGAAATTGGTCTGCACATTAGTGCTTCACTCAACAATTCTACCACGGGGAACTGCCTGGCAAATGGAACATCTGTAAATGGTGGTAAAGGTTATTCTTCAACATTGAAAAGGAAGAGATCACAAGTGGCAAATGTTCATGAGTTATTGAAAAGGAAAAATCGACGCAGGCCCTTGACTAAAGTTTTGGAGAGTACAGCCATGGTGTCAGTTCCTGTCATTTGTGATCATCTTCCCATTTCAAACAGTTCTCCACTATGTGGGGTAACTGATGGAAGAAGTTCTGGACTAGATTCTAATGATTCAAAGAAAACTTTTCCAATGTCAACACATAATTCAGATAGTACTGAAGCTGCTTGTTGTGAGAATGGCACTTCATTAATTGTTCATGACCATGGTAGTGGAGATGATGGCTCACAAATCAATCATGGGGTCAAGGAGAATGAAGCTTCTGGCCAACCAGGGCTAGTTGGCAAAGATTCTCCTGACAAACTATTTGATGTGCCGTTTGTTGGGGTTCTTGGGGAGGAGAAACACACTCCTGATTTGTCACCCATTTTGGTTTCTTGTTCACCTGACAAGCCTCAAGTTAGTGCATTGGGACAACAATCTTGTAATCTTAGTCCATGTGAAGCTGTGTCATTGAGAGATGAGATCAAGAATGAACCTGGTTGTACCAGTTCTGCTACTGGTCACAATATTGTGGGCCATAGACAAGACAAAGGTAGTTCAAAGTGGCAGTCAAAAGGAAAGAGGAATTCAAGACATACAAGTAAAAATATAAAACATGTCTCAAGAAAATATGTGGACACAAGCCACCAATCCAGTGCTTCTTTGCCAGTAATGGGAAATTCAGATGGAACATACCAGGGTGCTGGTTCGAAAGTTGATTGGAATGGCATTGGTGCACCGCATACATCGTACAACTGTAATTCTCAAGTTAAAAGCAAACCTGTTGCGGAAGGCCAACTAGAAGGATTTCGCGACTTGAACAAGCATATCAAGGGCACAACAACGGAGGCAAAGGCATTACCTGATGGATCTGTCATACCTCAAAGATTACTTCCTTATCGCCATTCACGATTCACTGTCAATTCCAGATATCAAATGGCAGATTTCCCTGGAAGAAACTATTGTTCTGATGCTTCATTATATGATGTTAAGCTAGAAGTTAAATCCAGCTACCGGCCACAACACGTGCCTTTGGTTTCTCTTGTGAGTAAACTGAATGGCAAAGCTTTTATAGGGCACCCTTTGACAGTTGAGGTTTTGGAAGAGGGTCATTGTGATAAAATGTTGAATGGCAGTGGATGTAACTTGGAAGCTGGTGATGTCTTTTGCATGGCCAAGCCAAACTTGGTAACCAGAAGAATACATTCCAAAAATTCAACACGTTTTTCACCTAAATCTTCCAAGATGAAAAAAACCGGGCTGATGAATAAAAAGATTCGGAAATTGTCTTCATTGACAGGTCACAGACAGTCAGAAGAGGAGAGAAAACCAGTGGTAGATAAGCTGAAGGGTCCTGTCATAGCTTGTATTCCCCTTAAAGTAGTGTTCAGTAGGATAAATGAAGCAGTGAGTGGTCAGGCACGGTCAACACACCGGGCATTACCAACATCATCCACCAACCCATGA | 2349 | 0.4304 | MGSSGKSNVNGIDASVGGLVWVRRRNGSWWPGRILGLHELSESCLVSPRSGTPVKLLGREDASVDWYNLEKSKRVKAFRCGEYDECIEKAKASAANSNKKAVKYARREDAILHALELESAHLDKESLSLCSGLDKPGSEHGGSAGELPLMSNSEDVTGDLSDSDDNSNSAPELSQSVISFEVPNHNGSLKMHSVQGRRRRTPNDSEDDGSEGVKRMRGLEDLGIGVVSKKKVQGTGATEIGLHISASLNNSTTGNCLANGTSVNGGKGYSSTLKRKRSQVANVHELLKRKNRRRPLTKVLESTAMVSVPVICDHLPISNSSPLCGVTDGRSSGLDSNDSKKTFPMSTHNSDSTEAACCENGTSLIVHDHGSGDDGSQINHGVKENEASGQPGLVGKDSPDKLFDVPFVGVLGEEKHTPDLSPILVSCSPDKPQVSALGQQSCNLSPCEAVSLRDEIKNEPGCTSSATGHNIVGHRQDKGSSKWQSKGKRNSRHTSKNIKHVSRKYVDTSHQSSASLPVMGNSDGTYQGAGSKVDWNGIGAPHTSYNCNSQVKSKPVAEGQLEGFRDLNKHIKGTTTEAKALPDGSVIPQRLLPYRHSRFTVNSRYQMADFPGRNYCSDASLYDVKLEVKSSYRPQHVPLVSLVSKLNGKAFIGHPLTVEVLEEGHCDKMLNGSGCNLEAGDVFCMAKPNLVTRRIHSKNSTRFSPKSSKMKKTGLMNKKIRKLSSLTGHRQSEEERKPVVDKLKGPVIACIPLKVVFSRINEAVSGQARSTHRALPTSSTNP | 782 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco1g00273 | 782 | Gene3D | - | 5 | 119 | - | - | |
| Phco1g00273 | 782 | MobiDBLite | consensus disorder prediction | 460 | 521 | - | - | |
| Phco1g00273 | 782 | ProSiteProfiles | PWWP domain profile. | 16 | 71 | IPR000313 | - | |
| Phco1g00273 | 782 | CDD | PWWP | 17 | 108 | - | - | |
| Phco1g00273 | 782 | MobiDBLite | consensus disorder prediction | 507 | 521 | - | - | |
| Phco1g00273 | 782 | PANTHER | T17B22.17 PROTEIN-RELATED | 1 | 778 | IPR044679 | - | |
| Phco1g00273 | 782 | MobiDBLite | consensus disorder prediction | 197 | 214 | - | - | |
| Phco1g00273 | 782 | MobiDBLite | consensus disorder prediction | 133 | 214 | - | - | |
| Phco1g00273 | 782 | MobiDBLite | consensus disorder prediction | 374 | 398 | - | - | |
| Phco1g00273 | 782 | MobiDBLite | consensus disorder prediction | 154 | 191 | - | - | |
| Phco1g00273 | 782 | SUPERFAMILY | Tudor/PWWP/MBT | 14 | 118 | - | - | |
| Phco1g00273 | 782 | MobiDBLite | consensus disorder prediction | 485 | 499 | - | - | |
| Phco1g00273 | 782 | MobiDBLite | consensus disorder prediction | 329 | 352 | - | - | |
| Phco1g00273 | 782 | Pfam | PWWP domain | 18 | 107 | IPR000313 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco1g00273 | Phco-Chr1 | 1954698 | 1958933 | Transposed |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco1g00273 | 1 | 1954698 | 1958933 | Phco1g00273 | 1 | 1954698 | 1958933 | ECH |