Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00245 ATGGGGAGCTCTGAAGGGGTGGGGGCATCGTCGAAGCAATGCGGTATCACGAAACCCATTTCGATGGCTGGACCAACGGTTAATGATTTGCAAAGGACTCTTGAGTTAGAAAAGTTTCTCGCTGTTTCGGGACTTTATGAGAACAAAGAGGAAGCTGCTAAGAGAGAAGAGGTTCTTCACCGACTTGAACAGATAGTAAAAAACTGGGTGAAGCAACTTACTCGCCTAAGGGGATACACTGATCAAATGGTGGAAGATGCAAATGCTATCATCTTGACTTTTGGTTCTTTTCGGCTTGGTGTTCATGGTCCTGGGGCTGACTTAGATACAATATGCATTGGACCTTCCTACGTGAATCGGGAGGAGGATTTTTTCTACACATTGCATGATATACTTGCCAACATGGAGGAGGTCTCTGAATTGCAACCAATTCCGGATGCTCATGTGCCGGTTATGAAATTCAAGTTTGATGGAATATCGATCGACCTCCTTTATGCCAGTATTTCTTGCTTGATTGTACCTGAAGACTTGGTTATATCTGATGTCTCTCTTCTACACAATGTTGATGAGCCTACTGTGCGAAGTTTGAATGGCTGCAGAGTTGCAGATCAAATTCTAAAGCTTGTTCCTAATGTTGAGCACTTTCGCACAACACTTCGCTGCTTGAAATTTTGGGCCAAAAGGCGAGGCATTTATTCCAATGTGACGGGTTTTCTTGGTGGTGTTAACTTGGCACTTCTTGTAGCTCGAGTATGCCAGTTGTATCCAAATGCAGTTCCCAGTATGCTTGTTTCTCGATTCTTTAGGGTATATACACAGTGGCGGTGGCCAACTCCTGTCATGTTATGTCCAATAGAGGAGAATGAACTTGGTTTTTCTGTTTGGCATCCTCGTAAAAATCCTCGTGACCGATCCCATCTTATGCCAATTATTACTCCCGCCTATCCCTGTATGAATTCTAGTTATAATGTTTCTACAAGCACACTTCGTGTTATGATGGAGCAATTCCAATTTGGCAACAAGATATGTGGGGATGTAGAACTGAACAAAGGTTGTTGGAAGGATCTGTTTGAACCATACGTTTTTTTTGAAAGTTATACAAACTACTTGCAAGTTGATGTAGTTGCTGCTGATGTCGATGACTTGCGCAATTGGAAGGGTTGGGTGGGATCACGCCTTCGGCAGTTGACCTTGATGATTGAGCGTGACACTTTTGGGAAGTTGCAGTGCCATCCCTATCACCACGAGTATATGGATACCTCGAGGCAGGGTGCCCATTGCGCTTTCTTTGTGGGTTTGCAGAGGAAGAAGGGAGAAGTAGTTCAAGAAGGCCAACAGTTTGATATACGAGGAACAATTGAAGAATTTTTGCATGCGGTTAATATGTACATGTTCTGGAAACCAGAGATGGAGATATATGTTTCTCATGTTCGTAGAAAGCAAATTCCATGTTATGTGTTCCCTGATGGTTATAAAAGATTGCGACCATCAAGGCCAACATCAAAGCCAACATCTAAAGAGAATCATAAATCATGTAAAAATGAAGTTTCTGGGACTGAGATGCGTAAGAGGAAGAACAATGATGGGTTGGATGTGAGGGAGGATGCTACACTAAAAAAGCAATGTACTAGTCCTCCTGAAGGTAGATGGGCAAGTCGCAGTGGCCTTGGTACTGGTGGTTTGTGTGTTGGTGCCGTGTCTGATAGTCAACAGTTGAGAAATGTGGAGTGCAATCATTTGTCAAACAGTGGGCAAGAGTCGGGTAGAACAGAGTCTCCTGAACCTGCCTCTAATTCTAGTGGGATTGCTTCGGTTACAAGTGATAGTGGTTCTTCTGAAGATACTGGAGCTGTATCTGTGGCAGGTTGTGTTGAAGATAGCACCGGGGGTGTTGATATGAACAACAATGGCAGGTTTGAGAGTAGCACTTACGTGAACGCTTCTGTCCAACTGGTGAAAAACAGAGTGACAAGCGGTGAGGAAGTATTTCAACACGAGCTAAAGCAAAATGCAATGCTAGGGATGGTTCTTGATTCTACAGTAAAGGTTCATTCAGAGGCGGTGCAAGAGGCGGTGATAAGGAGACTGCGTGTGGCATCTGCAGTGTGA 2109 0.4395 MGSSEGVGASSKQCGITKPISMAGPTVNDLQRTLELEKFLAVSGLYENKEEAAKREEVLHRLEQIVKNWVKQLTRLRGYTDQMVEDANAIILTFGSFRLGVHGPGADLDTICIGPSYVNREEDFFYTLHDILANMEEVSELQPIPDAHVPVMKFKFDGISIDLLYASISCLIVPEDLVISDVSLLHNVDEPTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGIYSNVTGFLGGVNLALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPTPVMLCPIEENELGFSVWHPRKNPRDRSHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFQFGNKICGDVELNKGCWKDLFEPYVFFESYTNYLQVDVVAADVDDLRNWKGWVGSRLRQLTLMIERDTFGKLQCHPYHHEYMDTSRQGAHCAFFVGLQRKKGEVVQEGQQFDIRGTIEEFLHAVNMYMFWKPEMEIYVSHVRRKQIPCYVFPDGYKRLRPSRPTSKPTSKENHKSCKNEVSGTEMRKRKNNDGLDVREDATLKKQCTSPPEGRWASRSGLGTGGLCVGAVSDSQQLRNVECNHLSNSGQESGRTESPEPASNSSGIASVTSDSGSSEDTGAVSVAGCVEDSTGGVDMNNNGRFESSTYVNASVQLVKNRVTSGEEVFQHELKQNAMLGMVLDSTVKVHSEAVQEAVIRRLRVASAV 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00245 702 CDD NT_PAP_TUTase 54 209 - -
Phco1g00245 702 FunFam Putative poly(A) polymerase gamma 190 357 - -
Phco1g00245 702 Gene3D - 15 357 - -
Phco1g00245 702 FunFam Nuclear poly(A) polymerase 4 361 477 - -
Phco1g00245 702 MobiDBLite consensus disorder prediction 580 616 - -
Phco1g00245 702 Pfam Poly(A) polymerase central domain 15 359 IPR007012 GO:0043631|GO:1990817
Phco1g00245 702 Pfam Poly(A) polymerase predicted RNA binding domain 362 421 IPR007010 GO:0003723|GO:0043631
Phco1g00245 702 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 362 488 IPR011068 GO:0003723|GO:0016779|GO:0031123
Phco1g00245 702 Gene3D Poly(A) polymerase predicted RNA binding domain 361 477 - -
Phco1g00245 702 PANTHER POLY A POLYMERASE 9 528 - -
Phco1g00245 702 MobiDBLite consensus disorder prediction 495 554 - -
Phco1g00245 702 Gene3D Beta Polymerase, domain 2 47 203 IPR043519 -
Phco1g00245 702 FunFam Poly(A) polymerase alpha, putative 47 203 - -
Phco1g00245 702 MobiDBLite consensus disorder prediction 580 617 - -
Phco1g00245 702 SUPERFAMILY Nucleotidyltransferase 15 208 IPR043519 -
Phco1g00245 702 SUPERFAMILY PAP/OAS1 substrate-binding domain 210 359 - -
Phco1g00245 702 Pfam Nucleotidyltransferase domain 88 163 IPR002934 GO:0016779
Phco1g00245 702 MobiDBLite consensus disorder prediction 500 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00245 Phco-Chr1 1723406 1727166 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00245 1 1723406 1727166 Phco1g00245 1 1723406 1727166 ECH