Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00242 ATGTGGCAAAAAAGCCACAGATCTTCAGAGGAGAGGAAACTGGAGCTTAGGCTTGGTCCACCTAGTGAAGAGTCTCTCAATGGAAGCATCAAAAAGTGCTTCACAGAAAGAAATGACTCACCACTTACTCTTGGTTACTCCTCAACTCACGAAATTTCCACTTCGGACAAGCCAGGTCCAGGTGGGGCTATGTTAACCACTGCATGGCGTTCCACATCCTACCACCAACACCAGGCTAAACCCAAAGCTCCATCATTTTTTCAACTCCAATCAAGGCCACAAAACATGTTAATGATGAGAAAGGAAGTTCCAAAACTTTGTTGTGTAGAGAATATGGCATTCTCACCCTCTTCTGCAGATGCAGCAGTGTCCAAAAGAACTGCTTCAGGTCCAGCAGTGGGTTGGCCTCCAATTCGTTCCTTCAGGAAGAACATTGCAAGTGGAAGCTCTTCTAAGCTGCCTACTGGGTCCCAACAGCATCAACATGTTGTTCCAGACAACGTTGCTAGCAAAAAACCTGCTCACAACTGTGGCAAAGGCTTGTTTGTGAAGATCAATATGGATGGTGTTCCTATAGGAAGAAAACTGAACATCAATGCTTATAACAGCTATGAAAATCTTTCCTCTGCTGTCGATGAGCTCTTTAGAGGCCTTCTTGCAGAGATGAAGTTATCTCATATTGCCTCTTCCCACTCTTGTTCTGCACAAAGAGATTCCAGTGCTGGTGGAATTCAAAACAAGGGAGAGGAAGACAAAGAGAAAGCCAATACAAGTTTATTGGTTGGAAGTGGAGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAGCATGCTTGTTGGAGATGTACCTTGGCACATGTTTGTGTCGACAGTTAGGAGGCTGAGGGTGTTGAAGAGTTCTGATCTCCCTGCTTTTACACTTAGTAGTAAGCAAGACTAG 942 0.4416 MWQKSHRSSEERKLELRLGPPSEESLNGSIKKCFTERNDSPLTLGYSSTHEISTSDKPGPGGAMLTTAWRSTSYHQHQAKPKAPSFFQLQSRPQNMLMMRKEVPKLCCVENMAFSPSSADAAVSKRTASGPAVGWPPIRSFRKNIASGSSSKLPTGSQQHQHVVPDNVASKKPAHNCGKGLFVKINMDGVPIGRKLNINAYNSYENLSSAVDELFRGLLAEMKLSHIASSHSCSAQRDSSAGGIQNKGEEDKEKANTSLLVGSGEYTLVYEDNEGDSMLVGDVPWHMFVSTVRRLRVLKSSDLPAFTLSSKQD 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00242 313 MobiDBLite consensus disorder prediction 1 31 - -
Phco1g00242 313 FunFam Auxin-responsive protein 175 312 - -
Phco1g00242 313 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 302 IPR003311 GO:0005634|GO:0006355
Phco1g00242 313 Pfam AUX/IAA family 14 303 IPR033389 -
Phco1g00242 313 MobiDBLite consensus disorder prediction 234 256 - -
Phco1g00242 313 Gene3D - 175 311 - -
Phco1g00242 313 ProSiteProfiles PB1 domain profile. 180 300 IPR000270 GO:0005515
Phco1g00242 313 MobiDBLite consensus disorder prediction 1 19 - -
Phco1g00242 313 SUPERFAMILY CAD & PB1 domains 172 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00242 Phco-Chr1 1709050 1711400 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Phco1g00242 AUX_IAA 1e-61 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00242 1 1709050 1711400 Phco1g00242 1 1709050 1711400 ECH