Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00221 ATGACACAAACAACAACCTCGTCTGAAACAACCTCTTCTACATCGTCACCGTCCTCGGATTCGGGCTCAAAGGTTCAGGCCCGGGCCAAGAGGCCCAGAGAATGCAGCAAGCACCCGGTGTACCACGGCGTACGGAAGCGCAATTGGGGCAAATGGGTCTCGGAAATTCGGGAACCGCGCAAGAAGTCCCGCATCTGGCTCGGAACATTCGCCACCCCTGAAATGGCGGCGCGGGCCCATGACGTGGCGGCGCTCACCATCAAGGGCCAATCCGCAATCCTGAACTTCCCAAAAATAGCAGGCCTGCTCCCGCGCCCCCTCACGTGCTCCCCACGTGACATTCAAGCCGCCGCCACCGCCGCCGCCTCCATGTCTAAATTCGACCCCGCAACGCAAACCTCGGACTCAGAAACAGAAACAGAAACTTCCCAAGAATCCGAACTGAGCGAAATAGTGGAGCTTCCGAACATCGAAGACAGCTTTGAGTCGTCCGTGGAGTCGTTCGTGATGGTGGACGTCGTGGACAGTTGGATGTTTCCGCCATTGGAGTCGTTCTGCGCGGCCTTTTCCGATGAGTTATTTCCGCAACAGTGTTGTTCTGAAACGCCATATACCCAGATGGGATTGAACGGTGCGTTTGGTTTGCACTAA 651 0.5637 MTQTTTSSETTSSTSSPSSDSGSKVQARAKRPRECSKHPVYHGVRKRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALTIKGQSAILNFPKIAGLLPRPLTCSPRDIQAAATAAASMSKFDPATQTSDSETETETSQESELSEIVELPNIEDSFESSVESFVMVDVVDSWMFPPLESFCAAFSDELFPQQCCSETPYTQMGLNGAFGLH 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00221 216 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Phco1g00221 216 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Phco1g00221 216 FunFam Ethylene-responsive transcription factor 2 39 98 - -
Phco1g00221 216 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Phco1g00221 216 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 160 - -
Phco1g00221 216 MobiDBLite consensus disorder prediction 125 139 - -
Phco1g00221 216 MobiDBLite consensus disorder prediction 1 41 - -
Phco1g00221 216 SUPERFAMILY DNA-binding domain 40 97 IPR016177 GO:0003677
Phco1g00221 216 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Phco1g00221 216 CDD AP2 41 97 IPR001471 GO:0003700|GO:0006355
Phco1g00221 216 MobiDBLite consensus disorder prediction 26 41 - -
Phco1g00221 216 MobiDBLite consensus disorder prediction 120 147 - -
Phco1g00221 216 Gene3D AP2/ERF domain 40 99 IPR036955 GO:0003700|GO:0006355
Phco1g00221 216 MobiDBLite consensus disorder prediction 1 25 - -
Phco1g00221 216 Pfam AP2 domain 39 89 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00221 Phco-Chr1 1542926 1543576 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco1g00221 AP2 4.6e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00221 1 1542926 1543576 Phco1g00221 1 1542926 1543576 ECH