Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00214 ATGTCTGCACCCTTGGAACATGATTACATAGGCTTAGCAGAGACTCCATACATGGAGAAAAGCTGTAACAAGATATCCTCTTCAGTTTCATCCAACATCTCCTCTGAGGATGAGAACAGTTCATCTCTGAACTTCAAGGAGACAGAGCTGAGGCTTGGCCTGCCCGGTTGTGAGTCTCCTGAGAACAAATCAGGAGCTTCAGGGATCTCTCTTTTTGGCAAGGATTTGCTGAATAATGGCTATTCTGCTTCCTCAACCCCTTCCAAGAACCTCAAGAGGGGTTTCTCTGATGCCATTAGCTCATCCTCCTCCTCCTCCTCTTCTGGGAAATGGATTTTCTCAGCCAGTGATGCAACTGGGGATGATTTGAGAAATGGTGTTAATACCTCTGCACTATGCAACACAGAGGTTGGTTGCTTGGTTCTTCACTCTGAGAAGCCGGCTCAGGTTGCTGCAACAATTGAACATGCTGCTACTCCTGCTGCAAAAGCACAAGTTGTGGGATGGCCACCAATTCGATCTTTTAGGAAGAACACAATGGCCTATAATTTGGCAAAAAGCAACACTGAAGCTGAGGAGAAATCAAGAGTTGGTTGTCTTTATGTTAAGGTCAGCATGGATGGTGCCCCTTATCTCAGAAAGGTTGATCTGAAAACCCACAGCAACTATATTGAACTTTCTTCTGCTCTTGAGAAAATGTTCAGCTGCTTCACCATTGGTCAATGCAGTTCAGGTGGAGTTGCTGGGAAAGAGGGATTGAGTGAGAGAGCTTTCAGGGATGTTGTTGATGGCTCTGAATATGTTTTTACATATGAAGATAAAGATGGAGACTGGATGCTTGTGGGTGATGTCCCTTGGGAGATGTTCACTGACTCATGTAAGAAACTAAGGATAATGAAAGGCTCTGAGGCAATTGGACTAGCTCCAAGGGCAATGGAAAAATGTAGGAGGCAATACTAG 960 0.449 MSAPLEHDYIGLAETPYMEKSCNKISSSVSSNISSEDENSSSLNFKETELRLGLPGCESPENKSGASGISLFGKDLLNNGYSASSTPSKNLKRGFSDAISSSSSSSSSGKWIFSASDATGDDLRNGVNTSALCNTEVGCLVLHSEKPAQVAATIEHAATPAAKAQVVGWPPIRSFRKNTMAYNLAKSNTEAEEKSRVGCLYVKVSMDGAPYLRKVDLKTHSNYIELSSALEKMFSCFTIGQCSSGGVAGKEGLSERAFRDVVDGSEYVFTYEDKDGDWMLVGDVPWEMFTDSCKKLRIMKGSEAIGLAPRAMEKCRRQY 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00214 319 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 42 306 IPR003311 GO:0005634|GO:0006355
Phco1g00214 319 FunFam Auxin-responsive protein 194 311 - -
Phco1g00214 319 Gene3D - 193 312 - -
Phco1g00214 319 Pfam AUX/IAA family 47 310 IPR033389 -
Phco1g00214 319 ProSiteProfiles PB1 domain profile. 199 301 IPR000270 GO:0005515
Phco1g00214 319 SUPERFAMILY CAD & PB1 domains 199 300 - -
Phco1g00214 319 MobiDBLite consensus disorder prediction 84 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00214 Phco-Chr1 1501768 1504287 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Phco1g00214 AUX_IAA 1.3e-86 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00214 1 1501768 1504287 Phco1g00214 1 1501768 1504287 ECH