Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00211 ATGATGGCTGGAAACCCTAACTGGTGGACTACACATCCACCATCTTTGATTCCTCCCCAGTATGTTCTTGGATCTTCTTCAATACCGTTTAATTCTTCCACACAGAACCCAGAGCCCCCTCACTCATTGAGCCAACTTCTTTTCACTGGTTTACCAGGAGAGGAGGAGAGAGTGGCATTCAGTCATTTTCAATCAAAAAAGTTGGATGAATGGAATGAGCACATGCTTAATCAATCCCACATAAATCCTATGGTTGATGTAATAAAGCAAGAGGTTGCCCAAAGTGGTAACTTCTATCACCAGGGACATGATCAAGAATTTCAGGTTTCTGGAGCACCTTGGTCACACATGGTGCCAGTTTCTTCTTCCCCTAGGTCTAGTGTTGCTAGCTTCAGTAGTGATAATTTATTGGATTCCCCTTATAACAAGGAAGATCATAGGAAGAACCAACTACCAGATCACACATCCGAGTGTAATACCACAGCCAGTGGTGGAGTTTATAAGAAGACTAAAAGTCAGCCATCTTCAAGCCAACCACCTCTCAAGGTGAGAAAGGAGAAGCTAGGAGATAGAATAACAGCCCTTCACCAGCTAGTTTCCCCATTCGGAAAGACTGACACAGCTTCTGTCTTGTTAGAAGCCATTGGATACATAAGATTCCTTCAGGGTCAAATTGAGGCACTGAGTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCTGTACATGGAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAGCTGTTGAATGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAGGATGCAAAAGACAAGCCAAAGGACTTGAGGACTAGAGGGTTGTGCTTGGTTCCTGTGTCTTGTACCCAACATGTTGGAAATGAAAATGGAGCTGATTACTGGGCACCAGCATATGGCGGTGGATTTTAA 954 0.4403 MMAGNPNWWTTHPPSLIPPQYVLGSSSIPFNSSTQNPEPPHSLSQLLFTGLPGEEERVAFSHFQSKKLDEWNEHMLNQSHINPMVDVIKQEVAQSGNFYHQGHDQEFQVSGAPWSHMVPVSSSPRSSVASFSSDNLLDSPYNKEDHRKNQLPDHTSECNTTASGGVYKKTKSQPSSSQPPLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYLGNGSKNMRNPQSVHGERNSVFPEDPGQLLNDNGLKRKGAPNQDAKDKPKDLRTRGLCLVPVSCTQHVGNENGADYWAPAYGGGF 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00211 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
Phco1g00211 317 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 51 299 - -
Phco1g00211 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 182 233 IPR036638 GO:0046983
Phco1g00211 317 MobiDBLite consensus disorder prediction 236 284 - -
Phco1g00211 317 MobiDBLite consensus disorder prediction 154 180 - -
Phco1g00211 317 CDD bHLH_AtbHLH_like 182 229 IPR045239 -
Phco1g00211 317 Gene3D - 182 238 IPR036638 GO:0046983
Phco1g00211 317 MobiDBLite consensus disorder prediction 139 153 - -
Phco1g00211 317 MobiDBLite consensus disorder prediction 116 138 - -
Phco1g00211 317 FunFam Transcription factor bHLH123 family 182 245 - -
Phco1g00211 317 MobiDBLite consensus disorder prediction 116 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00211 Phco-Chr1 1475405 1478022 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00211 1 1475405 1478022 Phco1g00211 1 1475405 1478022 ECH