Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00192 ATGAACATGCCGCCGAAGCCGAACCAGGTGGTAGTGAGAGACCTCGTTGAGGAAGCCAAGAAACGGATCGTCATACTCGTCGTATGCGTCGTCGGAATCTCCTATCTCATGTCCTTGACAAGCTCCTCAGTTTGGGTCAACTTGCCAGCTGCAGCCTCCTTGATTATTATTCTCCGCTATTTGTCGCTAGATTTTGAAATGAAGAGAAAAGCTGCAGCATACAACAATAAAGCAGGGTCCGTCAATGTTCAGTCTTCAAAGAAGCCTATGGAAAATCCTAAAGTTATTGCAAAGTTTGAGTGGAGAAAAAAAGTGAATTCTCCTGTCGTTGAGGATGCAATTGATCATTTCACCAGGCATTTAATTTCTGAGTGGGTGACAGATCTTTGGTATTCTCGCTTAACACCAGACAAAGAGGGTCCTGAGGAGTTAGTGCAAATAATTAATGGTGTTCTTGGGGAAATTTCAGGACGCATGAGAAACATAAACTTGATAGATTTTTTAATAAGGGATCTTGTCAATATTATTTGCACACACTTGGAGCTGTTTCGTGCTGCCCATTCAAAGATTGAAAAACATCATACAGGTCCATTAACAATCGCAAGTCGAGACATGGAATTGAAAATTGTTTTGGCTGCTGAGAACAAACTGCATCCTGCTTTATTTTCTGCAGAAGCTGAGCATAAGGTTTTACAGCATCTGATGACCGGTCTTATGCATTCTACCTTCAAGTCTGAGGATTTGAAGTGTTCTTTCTTTCGATATACTGTCAGGGAGCTTCTTGCATGTGCTGTAATACGACCTGTCCTAAACTTAGCAAATCCAAGATTTCTTAACGAGAGAATTGAATCTGTGGTAGTTAACAAGACCAGGGTTAACAAGGGGGTTGCTGCAGCTCAAGACGCATCTCACACTAAAGTAGATGAGTTACAGGTTTCATCTCATGATTTCTCCAAGACTTCAGATCCTTCTGTTACTGGTGTTGAGCTTGTGCAGCTAAAAAATGGTCAATCAAGAAATGTAGAGACTTCTGCAGAACATAATGCTCGTGATAATATTATTAAAGATCCATTGCTTTCAGTTTCAGTTGATAATCGATCTTCCCGTACATGGAGCTCATTGCCTGCAAACCCCCAAACTATTGATGATCAAAATATTCAACGACAACGCTCAGGAGGAGAGTGGGGAGATATTTTAGATGTCATCTCTCGCAGAAAGACCCAAGCTCTTGCTCCAGAACATTTTGAGAATGTGTGGACTAAAGGGAAAAATTACAAGAAAAAGGATGGTGAGAACCAGTCAAATGAGCACATTTCACAGCATCCTGTGGTAGGGAAACTGCCGAAGGTAGATCACATGAAAGCAATATCTAGACCTAAACAAAGAGATACTTATTCCAAGCTTATTCCCCCCAAGGGACACCACATTAATTCTGGACACAGTCAATTCTCTGTTGAAAATACATCCATTCATGCGGACAAGAATGGATCAAGTTCAGTTACCTCATATAAAGACAATGAGTCCGTTACATCATATCAAAATGATGAGAGCATCCACATTTATGGGCAGATAAGTGATTCAGAGAGCAGTACATCTTATACTTCTGAAGATGATGAAAGTAGTACTGTTACTGGTCTTGATACCCCTGTCACTAAGGTTTGGGATGGAAGAAGTAATAGAAACCAGGCAGTTTCTTATGTTCATCACCCACTTGAAAATTTTGACAAGCACAGTGGAAAGAAAAGGAATAAGAGACATTCTCATTATCCAAGACTATCCAGAGCCCAATCTGGCAATAAAAGGTCTTGGTCAGGTGGTCATAAAATGCAAACGTGGCAGGAAGTTGAGAGGACAAGCTTTTTATCTGGAGATGGTCAAGACATACTTAATTCTTCAAAATCACATATAGATTCTGAGGAGTCCAGTGATGATGCTGATATTGAAAGATTGGGCAGACTTTATAGTGGAGCAGCAGCCTCTTCTTCTGCCCACTCTATTTCTAAAACAGAATCTTGTAGTTTGTCTGTTACTCCCCTGAAAAGTTCCTCTGCGGCAGATTCCTTTTACAAGTTGAGATGTGAGGTCTTAGGTGCAAATATTGTCAAGAGTGGCTCTAAAACCTTTGCTGTTTACTCCATATCCGTTACAGATATAAATAATAACAGTTGGTCAATTAAAAGAAGGTTTCGTCATTTTGAGGAGCTACATAGACGCCTGAAAGAGTTTCCTGAGTATAACCTTCATTTGCCACCAAAACATTTTCTATCGACTGGTTTAGATGTACCAGTCATTCAAGAGCGCTGCGAATTACTGGATAAATATTTGAAGAAACTTATGCAACTACCAACTGTTTCGGAATCAATTGAAGTATGGGACTTTCTCAGTGTCGATTCTCAGACTTACATATTCTCAAATTCTTTTTCTATCATGGAAACATTACGAGCTGGCTTGGAAGCCAAGCCATTTGAGAAGACTAAAAACACTTCTCACTCTTCTGTACCTGCAAGTGATCCTGTGTCCTTTTGGAGAGAAAACTATAGTGCTGAAAGTAAAGAGTCTGTTATGAAAGCAAAAAATAATGTTGATGCTGATGGATTGAGGTCAAAAGTAAACAGCATGCCTCTTTCTCTACCAAAAAAGAATACACATCAACCTATAAAGTCATTTGAAAATTCTAGCGGCAATACAGATATTCTAGCACAGAAGAGTGCACCTTCTCCCAATAACTTGCAAAAGACAGTGAAAGGAAGAGATAATTTGGACGAGGTTTCTGAAGTGCACCGTGATACTTCTGATGTTTTTCCAACAGAGTGGGTGCCGCCAAATTTGAGTGTACCTATATTGGATTTGGTTGACGTTATCTTCCAGGTTCAAGATGGTGGATGGATTAGGCGGAAGGCTTTTTGGGTTGCTAAACAAGTCTTACAACTAGGAATGGGTGACGCATTTGATGACTGGTTGATTGAGAAAATCCAGCTTCTTCGTAAGGGATCAGTGATTGCTACAGGGGTCAAGCGAGTTGAGCAAATACTCTGGCCTGATGGAATATTCATAACCAAGCATCCAAATAGAAGACCACCGCCACCAGCTACAAGCCCATCTCAAAATTCTCCTCGTGGTAATCAAACTACACAAGTATCTTCTCCAAGGTTGGAAGAGGAACAGAAACGGGAGGCAGATCGGCGTGCAAAATTTGTATATGAGCTAATGATTGATCATGCACCACCAGCAATTGTAGGTCTTGTTGGTCGGAAGGAGTATGAGCAATGTGCTAGAGATCTATATTTTTTCCTTCAGTCATCCGTTTGCTTGAAGCAACTGGCTTTTGACATCCTGGAGCTGCTTCTGACGTCAGCATTTCCAGAGCTTGATGATATTTTCAAGCAGCTGCACGACGAAAAGCATAAATTTGGTGAGTTCAGACCACAGTAA 3432 0.4071 MNMPPKPNQVVVRDLVEEAKKRIVILVVCVVGISYLMSLTSSSVWVNLPAAASLIIILRYLSLDFEMKRKAAAYNNKAGSVNVQSSKKPMENPKVIAKFEWRKKVNSPVVEDAIDHFTRHLISEWVTDLWYSRLTPDKEGPEELVQIINGVLGEISGRMRNINLIDFLIRDLVNIICTHLELFRAAHSKIEKHHTGPLTIASRDMELKIVLAAENKLHPALFSAEAEHKVLQHLMTGLMHSTFKSEDLKCSFFRYTVRELLACAVIRPVLNLANPRFLNERIESVVVNKTRVNKGVAAAQDASHTKVDELQVSSHDFSKTSDPSVTGVELVQLKNGQSRNVETSAEHNARDNIIKDPLLSVSVDNRSSRTWSSLPANPQTIDDQNIQRQRSGGEWGDILDVISRRKTQALAPEHFENVWTKGKNYKKKDGENQSNEHISQHPVVGKLPKVDHMKAISRPKQRDTYSKLIPPKGHHINSGHSQFSVENTSIHADKNGSSSVTSYKDNESVTSYQNDESIHIYGQISDSESSTSYTSEDDESSTVTGLDTPVTKVWDGRSNRNQAVSYVHHPLENFDKHSGKKRNKRHSHYPRLSRAQSGNKRSWSGGHKMQTWQEVERTSFLSGDGQDILNSSKSHIDSEESSDDADIERLGRLYSGAAASSSAHSISKTESCSLSVTPLKSSSAADSFYKLRCEVLGANIVKSGSKTFAVYSISVTDINNNSWSIKRRFRHFEELHRRLKEFPEYNLHLPPKHFLSTGLDVPVIQERCELLDKYLKKLMQLPTVSESIEVWDFLSVDSQTYIFSNSFSIMETLRAGLEAKPFEKTKNTSHSSVPASDPVSFWRENYSAESKESVMKAKNNVDADGLRSKVNSMPLSLPKKNTHQPIKSFENSSGNTDILAQKSAPSPNNLQKTVKGRDNLDEVSEVHRDTSDVFPTEWVPPNLSVPILDLVDVIFQVQDGGWIRRKAFWVAKQVLQLGMGDAFDDWLIEKIQLLRKGSVIATGVKRVEQILWPDGIFITKHPNRRPPPPATSPSQNSPRGNQTTQVSSPRLEEEQKREADRRAKFVYELMIDHAPPAIVGLVGRKEYEQCARDLYFFLQSSVCLKQLAFDILELLLTSAFPELDDIFKQLHDEKHKFGEFRPQ 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00192 1143 MobiDBLite consensus disorder prediction 1035 1049 - -
Phco1g00192 1143 ProSiteProfiles PX domain profile. 689 801 IPR001683 GO:0035091
Phco1g00192 1143 Pfam PX domain 719 797 IPR001683 GO:0035091
Phco1g00192 1143 SUPERFAMILY PX domain 690 798 IPR036871 GO:0035091
Phco1g00192 1143 MobiDBLite consensus disorder prediction 491 510 - -
Phco1g00192 1143 MobiDBLite consensus disorder prediction 525 609 - -
Phco1g00192 1143 Pfam Sorting nexin C terminal 962 1101 IPR013937 -
Phco1g00192 1143 SMART PX_2 693 797 IPR001683 GO:0035091
Phco1g00192 1143 MobiDBLite consensus disorder prediction 1018 1057 - -
Phco1g00192 1143 Pfam PXA domain 107 284 IPR003114 -
Phco1g00192 1143 MobiDBLite consensus disorder prediction 592 609 - -
Phco1g00192 1143 CDD PX_SNX19_like_plant 691 795 - -
Phco1g00192 1143 PANTHER PX SERINE/THREONINE KINASE PXK 103 1138 - -
Phco1g00192 1143 SMART PXA_3 111 290 IPR003114 -
Phco1g00192 1143 Gene3D - 689 805 IPR036871 GO:0035091
Phco1g00192 1143 MobiDBLite consensus disorder prediction 525 566 - -
Phco1g00192 1143 ProSiteProfiles PXA domain profile. 107 286 IPR003114 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00192 Phco-Chr1 1355204 1362595 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00192 1 1355204 1362595 Phco1g00192 1 1355204 1362595 ECH