Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00191 ATGGTAGACGAAGAAGGAGCGCCAAAATTCCCAGGTTTTCCTTTCGAACCCTACTCCATTCAGATTGATTTCATGAACAGCTTGTATCAATCTCTCAATCAAGGAGGCGTGTCTATGTTGGAAAGCCCAACTGGCACCGGGAAGACCATGAGTGTGATTTGCAGTGCCTTGCAATGGGTGCTTGATCGGAGGCTACAACAGGAAGCAGTTTGTGATGAGAATCCAGGGGATGGCGGTGGTGGCGGAGTTGGTTCAGATGACGAACCTGATTGGATGAGGGGCTTTGTCGTCAACAAAGTGGAGAATAATAAGAAGAAAGAAAAGGGCGGGTCTGTGTGGGGAAAACCTCATAATAGTAAAAAGAGTACGGACATTCGTAAGGATTTTATGGTTATGGGCGCTGGAGAGGAGAAGGGGTGTGAGAGTATGCAAACGAAAATTGATGCAGCGGATGCTATTGATAAGGAGTTTTTATTGGAGGAATACGAGAGTGAAGATGAGATAAGGCCAGGGAGTGTGATGTCCAAGAGGAAGACTGTTAAAACCTCCTTTAGTTCCTCTAGTGAAGATGAGTCTAGCGAGGAGGAAGAGGAGGAGAAGAAGTTGAAGGTTTATTTCTGTAGTAGAACTCATTCACAGCTTTCGCAGTTCATGAAGGAGTTGAGGAGGACGGTCTTCGCCAAAGAGATGATGGTTGTGAGTTTAGGCTCCAGGAAAAATCTTTGCATTAATGAAGAGGTAGTTGCACTTGGTAACTCTACACGCATAAATGAGCGATGCTTGGAACTTCAGAAGAAAAAGAAAAATGGTGCGACAAAAGTTAAGAACTTAAAAGTAGGTGCAGGGATACGCAGAAGAAAGGCCACCTCTGGCTGCCCAATGCTTACAAAACATAGAGTTCAACAAGAATTTAGGAATGAGGTATTTCAACGAAGACCCTTGGATATTGAAGATCTTGCTAATCTTGGAAAAACTATGGGAACTTGTCCATACTATGGCTCTAGAAGCATGGTTCGAAGAGCTGATCTTGTTGTCCTACCATATCAATCTCTTCTGTCTAAATCATCTCGTGATGCACTCGGCCTGAATTTGAAATCCAATATTGTTATAATAGACGAGGCTCATAATTTAGCTGATTCACTCATCGAAATGTATGACTCCAAAATTACTTTTTCACAGCTGGAGACTGTGCACAACCATTTGGAGCAGTACTTTGGGAGATTCAGGAATCTTTTGGGACCTACTAATCGGAGATACATTCAAACTCTCATGGTCCTCACACAAGCTTTTCTTCGAGTACTACTTGATGATAAAGATGGAAATCTTATAGATTCTTGCTGTGATTTAGCTCAAGCTTCAAGTATCGCCTCCGATTTTACTATGGCCATCAATGATTTTTTATTCGAACAAAATATAGACAATATCAACTTGGTCAAATTGTTGAAATATATTAAGGAAAGTAATCTCATGCACAAGGTTAGTGGTTATGGAGAGAAGTTGGCTACCTTGGAGAAGATACCATCACACCATAAGATCTGGGAACATGCCGAAGAGGGAAGTTGTCTATCTGCTTTCCAGGCCTTAGCTAACATATTACTATCACTGACAAACAATGATGGTGATGGAAGAATAATAATTTCCAGGTCCAGGTTAACGAGCCTCAAGAAGCAAGGAGGATATATAAAGTATGTTATGCTCAGTGGAGAGAAGATTTTTTCTGAGATTGTAGATGAAGCACATGCCGTTGTATTAGTAGGGGGAACACTACGACCTATAGAAGAGACTAGGGAGAGACTCTTTCCATGGTTACCACCAAACCAGCTGCATTTCTTTTCATGCGGGCATATTGTTCCTCCAGATAGCATTTTGCCAATTGCTCTTGCACGGGGACCTACTGGACGCACCTTTAATTTTAGCTTCAGCTCCAGGAGCTCACCAGACATGATACGAGAACTGGGCCTTTTGATGTGTAATCTGGTGACTGTGGTTCCGGAAGGAATTGTTGTCTTCTTCCCTTCTTTTGATTATGAAAATAGTGTCTATGAGCATTGGGAATCATCTGGCATCCTTGAAAGGATTACAAAGAGAAAGCGTGTCTTTAGGGAGCCTAGAAATAACATGGACGTTGAATCCGTTCTCAAGGAGTATAAAGATACCGTTTATACACCATCGAGTATGAATTCAGAAGTAAACCAAGCATCTTATAGTGGTGCAATACTCCTTGCCGTTGTTGGTGCGAAGTTATCCGAAGGGATCAACTTAAGTGATGGGATGGGCCGATGTATAGTCATGGTTGGACTACCCTATGCTAGCCCATCCGATATAGAGTTGTTAGAGAGGATAAAGCACATTGATCGTTTTGAAAATTTAAAGCTTGAGAATTCTAGCGTTTCTACCAGTTATGATTTATACAGTAGACATGTTGAAGGTGGTTTTGACATCTTAAGAAGTTGCACTCACAGAGGAAAAGAGTACTATGAGAATCTCTGCATGAAAGCTGTAAATCAATCAATAGGTAGAGCTATCCGTCACATTAATGACTATGCAGCAATTTTGTTGGTTGACACGAGATATGCATCTGATTCCTCAAAACGGAGTTTGTCTCACCCAGTCACCAAGCTCCCGGAGTGGATAAAAGATCGTCTTGTTTCTTCTATTAACTATGGTGAGGTACATAGGTCGTTGCATCAGTTTTTCAAACTCAAAAAGACAAGCTGCCTATAG 2724 0.417 MVDEEGAPKFPGFPFEPYSIQIDFMNSLYQSLNQGGVSMLESPTGTGKTMSVICSALQWVLDRRLQQEAVCDENPGDGGGGGVGSDDEPDWMRGFVVNKVENNKKKEKGGSVWGKPHNSKKSTDIRKDFMVMGAGEEKGCESMQTKIDAADAIDKEFLLEEYESEDEIRPGSVMSKRKTVKTSFSSSSEDESSEEEEEEKKLKVYFCSRTHSQLSQFMKELRRTVFAKEMMVVSLGSRKNLCINEEVVALGNSTRINERCLELQKKKKNGATKVKNLKVGAGIRRRKATSGCPMLTKHRVQQEFRNEVFQRRPLDIEDLANLGKTMGTCPYYGSRSMVRRADLVVLPYQSLLSKSSRDALGLNLKSNIVIIDEAHNLADSLIEMYDSKITFSQLETVHNHLEQYFGRFRNLLGPTNRRYIQTLMVLTQAFLRVLLDDKDGNLIDSCCDLAQASSIASDFTMAINDFLFEQNIDNINLVKLLKYIKESNLMHKVSGYGEKLATLEKIPSHHKIWEHAEEGSCLSAFQALANILLSLTNNDGDGRIIISRSRLTSLKKQGGYIKYVMLSGEKIFSEIVDEAHAVVLVGGTLRPIEETRERLFPWLPPNQLHFFSCGHIVPPDSILPIALARGPTGRTFNFSFSSRSSPDMIRELGLLMCNLVTVVPEGIVVFFPSFDYENSVYEHWESSGILERITKRKRVFREPRNNMDVESVLKEYKDTVYTPSSMNSEVNQASYSGAILLAVVGAKLSEGINLSDGMGRCIVMVGLPYASPSDIELLERIKHIDRFENLKLENSSVSTSYDLYSRHVEGGFDILRSCTHRGKEYYENLCMKAVNQSIGRAIRHINDYAAILLVDTRYASDSSKRSLSHPVTKLPEWIKDRLVSSINYGEVHRSLHQFFKLKKTSCL 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00191 907 SMART deadxpd 9 417 IPR006554 GO:0003678|GO:0016818
Phco1g00191 907 Gene3D - 634 874 IPR027417 -
Phco1g00191 907 MobiDBLite consensus disorder prediction 71 91 - -
Phco1g00191 907 Gene3D - 14 74 IPR027417 -
Phco1g00191 907 SMART ultradead3 13 453 IPR014001 -
Phco1g00191 907 NCBIfam DNA repair helicase (rad3) 178 891 IPR013020 GO:0003678
Phco1g00191 907 Gene3D - 178 431 IPR027417 -
Phco1g00191 907 Pfam Helicase C-terminal domain 657 870 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Phco1g00191 907 Pfam DEAD_2 206 394 IPR010614 GO:0003677|GO:0003678|GO:0005524
Phco1g00191 907 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 13 900 IPR045028 -
Phco1g00191 907 SMART Cxpdneu3 674 860 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Phco1g00191 907 MobiDBLite consensus disorder prediction 164 195 - -
Phco1g00191 907 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 387 IPR027417 -
Phco1g00191 907 MobiDBLite consensus disorder prediction 106 126 - -
Phco1g00191 907 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 7 423 IPR014013 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00191 Phco-Chr1 1348525 1353292 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00191 1 1348525 1353292 Phco1g00191 1 1348525 1353292 ECH