Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00180 ATGAGTGTGGTGGGTTTTGATTTCGGTAACGAGAGCTGCATTGTTGCAGTTGCGAGGCAGAGAGGGATTGACGTTGTGCTTAATGACGAGTCGAAACGTGAAACGCCTGCCATTGTGTGTTTTGGTGATAAGCAGCGTTTCATTGGCACTGCTGGTGCTGCCTCCAGTATGATGAACCCTAAGAATTCAATATCGCAGTTTAAGAGACTCATTGGTAGAAAATTCTCTGATCCCGAATTGCAACGGGATCTTAAGTCATTGCCATTTCTTGTTACTGAGGGGAAGGATGGGTACCCGTTGATTCACGTGCAGTACTTGGGTGAGGCTAGGAAATTTACACCTACACAAGTGTTTGGCATGATGTTGTCGAACCTTAAGGAAATTGCAGAGAAGAATCTCACTACGGCTGTTGTTGATTGTTGCATTGGAATTCCAGCTTATTTTACTGATTTGCAGAGGAGGGCGGTGTTGGATGCGGCCACGATTGTTGGTCTACACCCGCTTCAATTGATTCACGAGATGACTGCCACTGCCTTGGCATATGGGATTTATAAAACGGATCTTCCAGAAAACGATCAACTGAATGTTGCTTTTGTTGATGTTGGGCATGCTAGCATGCAAGTGTGCATTGCTGGATTCAAGAAGGGGCAGTTGAAAGTGTTGGCTCATTCGTATGATAGGTCTTTAGGTGGTAAGGATTTTGACGAGGTTTTGTTCCATCACTTTGCTACTAAGTTCAAGGAGGAGTATAAGATTGATGTTGCCCAGAATACCAGGGCTTGCATAAGGTTGAGGGCTGCTTGTGAGAAGATGAAGAAGATGCTCAGTGCAAATAGTGAGGCACCTCTCAACATTGAGTGTTTGATGGACGAGAAGGATGTTCGGGGCTTCATGAAGCGAGATGAGTTTGAGCAACTAAGTCTTCCAATTTTGGAACGTGTGAGGGGACCTTTGGAGAAGGCACTTGCTGAAGCAGGTCTTACCATTGAAAATGTACATATGGTTGAGGTAGTTGGTTCAGGTTCTCGTGTACCTGCCGTAAATAAAATATTGACCGAGTTTTTCAAGAAAGAGCCTAGGCGAACAATGAATGCTAGTGAGTGTGTTGCTAAGGGTTGTGCGTTGGAATGTGCAATTCTTAGTCCCACGTTTAAAGTACGAGAATTTCAGATCAATGAAAGCCTTCCTTTCTCGATTTCACTTACATGGAAAGGTACTGGTCCAGATGCACAGGACAATGCACCAGAAAATCAGCAGAGTTCCCTTGTTTTTCCCAAGGGTAATCCAATGCCAAGTATGAAAGCTCTAACATTCTACAGGTCAGGAACATTTTCTATTGATGTAAATTATGGCGATGTCAGTGAGCTGCAAACACCTGCCAAGATTAGCACATATACTATTGGTCCATTCCAAACTGCAAATAGTGAAAGGACAAAAGTGAAAGTGAAAGTTCGTTTGAATATTCATGGAATTGTATCTCTCGAGTCTGCAATGCTCCTGGAAGAAAAAGAAGTTGAGGTTCCGATTACCAAAGAAGCAGCAGGGGAAAATACTAAGCCGAACGAAGCCCCTATTGAGGTTGCTACACCTCCAGCCCCCAATGACGCTAGTGCAAATGTGCAAGATGCAAAGGTTAGTACTGCTTCGGGAGCTGAAAATGGTGTTCCTGAGAATGGAGATAAGCCTTTGCAAACAAATACTGATACCAAGGCTCCAAAGAAAAAGGTAAAAAAAACAAGCATTTCTGTATCAGAGGTAGTTTATGGAGCAATGGTCTCTTTGGATGTCCAAAAAGCAATAGAGAAGGAGTTTGAAATGGCTCTGCAAGATCGTGTGATGGAGGAAACGAAGGACAAGAAAAATGCAGTTGAGGCTTATGTTTATGACATGAGAAACAAGCTTAATGACAAATACCAAGAGTTCGTCATTGCTTCAGAGAGAGAAGATTTTACTGCCAAACTCCAGGAAGTGGAAGATTGGCTTTATGATGAGGGTGAAGATGAAGCTAAAGGTGTATATATTGCTAAGCTTGAAGAACTAAAAAAGCAAGGTTATCCAATTGAAGGGCGTTACAAAGAATACATGGAGAGGGGTAGTATAATTGAGCAATTCATATATTGTATAAATAGTTATAGAGAAGCTGCAAAGTCGAAGGATCCCAAATTTGATCACATTGACATTAGTGAGAAACAGAAGGTCATAAATGAATGTGTTGAAGCTGAAAAATGGTTTACGGAGAAGCAACAACAACAAAACTCACTTCCAAAATATGCCAACCCTGTACTCTTGTCCGCTGAAATAAGAAAGAAAGCTGAGATTGTTGATAGGTTCTGCAAGCCAATTATGACAAAACCAAGGCCAACCAAACCAACTACTTCAACTGGATCAGGAGCCCCATCTCCGCAGGATGATGAGCAGCAACACCCTCGAGGGGATGATAATGCCAACAGTAACGAAAATACTGGGGATAGAAGTAGCCAGGCTGCATCAGCGTCTACTGAACCAATGGAGACTGATAAGTCTGAGAACGCAGGCGCTGCATAA 2544 0.4277 MSVVGFDFGNESCIVAVARQRGIDVVLNDESKRETPAIVCFGDKQRFIGTAGAASSMMNPKNSISQFKRLIGRKFSDPELQRDLKSLPFLVTEGKDGYPLIHVQYLGEARKFTPTQVFGMMLSNLKEIAEKNLTTAVVDCCIGIPAYFTDLQRRAVLDAATIVGLHPLQLIHEMTATALAYGIYKTDLPENDQLNVAFVDVGHASMQVCIAGFKKGQLKVLAHSYDRSLGGKDFDEVLFHHFATKFKEEYKIDVAQNTRACIRLRAACEKMKKMLSANSEAPLNIECLMDEKDVRGFMKRDEFEQLSLPILERVRGPLEKALAEAGLTIENVHMVEVVGSGSRVPAVNKILTEFFKKEPRRTMNASECVAKGCALECAILSPTFKVREFQINESLPFSISLTWKGTGPDAQDNAPENQQSSLVFPKGNPMPSMKALTFYRSGTFSIDVNYGDVSELQTPAKISTYTIGPFQTANSERTKVKVKVRLNIHGIVSLESAMLLEEKEVEVPITKEAAGENTKPNEAPIEVATPPAPNDASANVQDAKVSTASGAENGVPENGDKPLQTNTDTKAPKKKVKKTSISVSEVVYGAMVSLDVQKAIEKEFEMALQDRVMEETKDKKNAVEAYVYDMRNKLNDKYQEFVIASEREDFTAKLQEVEDWLYDEGEDEAKGVYIAKLEELKKQGYPIEGRYKEYMERGSIIEQFIYCINSYREAAKSKDPKFDHIDISEKQKVINECVEAEKWFTEKQQQQNSLPKYANPVLLSAEIRKKAEIVDRFCKPIMTKPRPTKPTTSTGSGAPSPQDDEQQHPRGDDNANSNENTGDRSSQAASASTEPMETDKSENAGAA 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00180 847 MobiDBLite consensus disorder prediction 534 566 - -
Phco1g00180 847 Gene3D - 186 360 - -
Phco1g00180 847 Gene3D Actin; Chain A, domain 4 230 313 - -
Phco1g00180 847 PRINTS 70kDa heat shock protein signature 140 160 - -
Phco1g00180 847 PRINTS 70kDa heat shock protein signature 2 15 - -
Phco1g00180 847 PRINTS 70kDa heat shock protein signature 30 42 - -
Phco1g00180 847 PRINTS 70kDa heat shock protein signature 363 383 - -
Phco1g00180 847 PRINTS 70kDa heat shock protein signature 332 348 - -
Phco1g00180 847 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 707 787 IPR029048 -
Phco1g00180 847 FunFam Heat shock 70 kDa protein 4 38 113 - -
Phco1g00180 847 FunFam Heat shock 70 kDa protein 4 1 75 - -
Phco1g00180 847 CDD HSPA4_like_NDB 2 381 - -
Phco1g00180 847 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 595 690 IPR029048 -
Phco1g00180 847 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Phco1g00180 847 Gene3D - 593 701 IPR029048 -
Phco1g00180 847 Pfam Hsp70 protein 3 691 IPR013126 GO:0005524|GO:0140662
Phco1g00180 847 MobiDBLite consensus disorder prediction 813 839 - -
Phco1g00180 847 FunFam Heat shock 70 kDa protein 4 109 207 - -
Phco1g00180 847 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 624 IPR029047 -
Phco1g00180 847 FunFam Heat shock 70 kDa protein 4 230 313 - -
Phco1g00180 847 SUPERFAMILY Actin-like ATPase domain 195 380 IPR043129 -
Phco1g00180 847 MobiDBLite consensus disorder prediction 786 803 - -
Phco1g00180 847 ProSiteProfiles Ig-like domain profile. 345 463 IPR007110 -
Phco1g00180 847 Gene3D - 5 374 - -
Phco1g00180 847 PANTHER HSC70CB, ISOFORM G-RELATED 1 839 - -
Phco1g00180 847 MobiDBLite consensus disorder prediction 512 573 - -
Phco1g00180 847 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 532 IPR029047 -
Phco1g00180 847 MobiDBLite consensus disorder prediction 778 847 - -
Phco1g00180 847 Gene3D - 38 113 - -
Phco1g00180 847 FunFam Heat shock 70 kDa protein 4 591 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00180 Phco-Chr1 1287523 1292063 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00180 1 1287523 1292063 Phco1g00180 1 1287523 1292063 ECH