Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00173 ATGCCTCTCCGACTCGAAATTAAGCGAAAGCTCGCGCAAAGATCAGAGAGAGTGAAGTCTGTGGATCTACATCCTACAGAACCATGGATTCTAGCAAGTTTATACTCTGGAACTGTCTGTATCTGGAACTACCAATCTCAGACCATGGCCAAGTCTTTTGAGGTTACTGAGTTACCAGTTAGGTCAGCTAAGTTTATTGCACGCAGACAATGGGTTGTGGCAGGGGCAGACGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTAAAAGTATTTGAGGCACATACAGATTACATTAGGTGTGTGGCAGTTCATCCTACCCTTCCTTACGTGTTGTCATCATCTGATGATATGCTCATAAAGCTTTGGGATTGGGAAAAGGGCTGGGTCTGTACCCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCTAGTGCATCTCTTGATCGCACCATAAAGATTTGGAATCTTGGCTCCCCTGACCCAAATTTTACATTAGATGCCCATCAAAAAGGAGTGAATTGTGTTGATTACTTTACTGGTGGTGACAAACCTTATCTGATTACTGGTTCTGATGATCACACTGCCAAGGTATGGGATTACCAAACCAAAAGTTGTGTCCAGACTCTAGAAGGTCACACACACAATGTATCTGCTGTATGCTTTCATCCTGAATTACCTATAATCATTACTGGATCTGAGGATGGCACAGTGCGCATTTGGCATTCAACAACTTATAGGCTCGAGAACACATTGAACTATGGCCTTGAAAGAGTTTGGGCTGTTGGATACCTGAGGGGTTCACGTCGGGTTGTGATAGGCTATGATGAAGGTACTATTATGGTCAAACTTGGTCGAGAAGAACCTGTAGCCAGCATGGATAACAGTGGAAAAATAATTTGGGCTAAGCATAATGAAATTCAAACTGTCAATATAAGGAGTGTAGGAGCAGATTTGGAGATTGCTGATGGAGAAAGGTTACCATTGGCTGTTAAGGAGTTGGGCACCTGTGATCTCTATCCACAAAGTCTAAGGCACAATCCAAATGGGAGGTTTGTTGTTGTTTGTGGAGATGGGGAATACATTATATACACTGCTTTGGCATGGAGAAATAGATCGTTTGGTTCTGCCCTGGAGTTTGCTTGGTCTTCAGATGGGGAGTATGCTGTAAGAGAAAGTACATCAAAGGTCAAAATTTTCAGCAAAAATTTCCAGGAAAAGAAGAGTATCCGACCAACTTTTTCCGCTGAACGAATATTTGGTGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATTCGTCGTATTGATGTTAATGTTAAAAACCTCTACTGGGCTGACAGTGGTGATCTAGTGACAATTGCTAGTGATACATCATTCTACATTCTGAAGTACAATCGTGATGTTGTTGCATCATATTTAGATAGTGGAAGCCCTGCAGATGAGCAAGGTGTTGAAGATGCCTTTGAGCTCCTACATGAAATGAATGAACGCGTCAGGACAGGGATCTGGGTTGGGGATTGCTTTATCTACAACAATTCTTCTTGGAGGCTTAACTATTGTGTTGGTGGTGAGGTAACTACAATGTTTCATTTGGACCGTCCTATGTACTTATTGGGATATCTTGCCAGCCAAAGTAGGGTCTATTTGATAGACAAGGAGTTCAATGTTATGGGATACACACTACTTTTAAGTTTGATTGAGTACAAGACACTTGTCATGCGTGGTGACTTGGAAAGAGCCAATGAAATTCTACCATCAATTCCAAAAGATCATCATAACAGTGTGGCTTGTTTCCTGGAATCGCGAGGGATGATTGAGGATGCTCTTGAAGTAGCCACTGACCCTGACTACAGGTTTGATCTAGCCATTCAGCTTGGAAGATTAGAGGTTGCTAAGGGTATTGCCACTGAAGTGCAGAGTGAGTCTAAATGGAAGCAATTGGGAGAATTAGCTATGTCTACTGGAAAGTTAGAAATGGCTGAAGAGTGTTTAAAATATGCAATGGATTTGAGTGGGTTATTGCTGCTATATTCTTCTTTAGGGGATGCTGAAGGAATATCAAAACTTGCAACTCTTGCTAAAGAGCAAGGGAAAAATAATGTTGCATTCCTTTGCTTATTCATGTTGGGTAAACTTGAGGACAGCCTTCAATTGTTGGTGGAAAGCAATCGGATTCCAGAGGCTGCTTTAATGGCTCGATCCTATCTCCCAAGCAAGGTCCCAGAGATAGTCGCAATTTGGAGAAAAGATCTCAGTAAGGTTAATTCAAAAGCCGCCGAATCATTGGCTGATCCTGAGGAGTATCCTAATTTGTTTGAGGATTGGCAAGTTGCACTTGCTGTTGAGTCTAAAGCTGCAGAAACAAGAGGCGTTTACCCTCCTGCATCAGAGTATGTGAACCAGGCTGATAAATCACATATCACCCTTGTTGAAGCTTTCAGAAACATGCAGGTAGAAGAAGGGGATCAGCCTCTTGAGAATGGGGACTCTATCCACGAGTTGACTGAACTTAATGGGGAAGAGCACTATCCAGATGAACACAAGGAACAAAATGGGGAGGAAGGAAGCCAAGAGGAGGCAGTTGTAGTGGATGCCGATTCTACTGATGGTGCAATCCTCATCAACGGTAATGAGGCGGACGAAGAGTAA 2730 0.422 MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFIARRQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAVGYLRGSRRVVIGYDEGTIMVKLGREEPVASMDNSGKIIWAKHNEIQTVNIRSVGADLEIADGERLPLAVKELGTCDLYPQSLRHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFAWSSDGEYAVRESTSKVKIFSKNFQEKKSIRPTFSAERIFGGTVLAMCSNDFICFYDWAECRLIRRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVASYLDSGSPADEQGVEDAFELLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKDHHNSVACFLESRGMIEDALEVATDPDYRFDLAIQLGRLEVAKGIATEVQSESKWKQLGELAMSTGKLEMAEECLKYAMDLSGLLLLYSSLGDAEGISKLATLAKEQGKNNVAFLCLFMLGKLEDSLQLLVESNRIPEAALMARSYLPSKVPEIVAIWRKDLSKVNSKAAESLADPEEYPNLFEDWQVALAVESKAAETRGVYPPASEYVNQADKSHITLVEAFRNMQVEEGDQPLENGDSIHELTELNGEEHYPDEHKEQNGEEGSQEEAVVVDADSTDGAILINGNEADEE 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00173 909 PANTHER COATOMER 5 313 - -
Phco1g00173 909 Pfam Coatomer WD associated region 319 763 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Phco1g00173 909 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Phco1g00173 909 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Phco1g00173 909 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Phco1g00173 909 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 224 IPR001680 GO:0005515
Phco1g00173 909 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Phco1g00173 909 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Phco1g00173 909 Pfam WD domain, G-beta repeat 133 171 IPR001680 GO:0005515
Phco1g00173 909 Pfam WD domain, G-beta repeat 91 127 IPR001680 GO:0005515
Phco1g00173 909 Pfam WD domain, G-beta repeat 177 215 IPR001680 GO:0005515
Phco1g00173 909 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Phco1g00173 909 Gene3D - 11 300 IPR015943 GO:0005515
Phco1g00173 909 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 180 IPR001680 GO:0005515
Phco1g00173 909 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 172 - -
Phco1g00173 909 SMART WD40_4 174 215 IPR001680 GO:0005515
Phco1g00173 909 SMART WD40_4 46 85 IPR001680 GO:0005515
Phco1g00173 909 SMART WD40_4 4 43 IPR001680 GO:0005515
Phco1g00173 909 SMART WD40_4 218 257 IPR001680 GO:0005515
Phco1g00173 909 SMART WD40_4 88 127 IPR001680 GO:0005515
Phco1g00173 909 SMART WD40_4 131 171 IPR001680 GO:0005515
Phco1g00173 909 SUPERFAMILY WD40 repeat-like 227 494 IPR036322 GO:0005515
Phco1g00173 909 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Phco1g00173 909 CDD WD40 17 297 - -
Phco1g00173 909 PIRSF Beta'-COP 2 894 IPR016453 -
Phco1g00173 909 Gene3D - 590 798 - -
Phco1g00173 909 FunFam Coatomer subunit beta 11 300 - -
Phco1g00173 909 MobiDBLite consensus disorder prediction 862 882 - -
Phco1g00173 909 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Phco1g00173 909 MobiDBLite consensus disorder prediction 862 909 - -
Phco1g00173 909 FunFam Coatomer subunit beta 590 798 - -
Phco1g00173 909 CDD Coatomer_WDAD_beta-like 304 779 - -
Phco1g00173 909 SUPERFAMILY WD40 repeat-like 3 297 IPR036322 GO:0005515
Phco1g00173 909 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00173 Phco-Chr1 1249876 1259619 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00173 1 1249876 1259619 Phco1g00173 1 1249876 1259619 ECH
Phco10g01933 10 41304060 41316800 Phco1g00173 1 1249876 1259619 PCT