Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00169 ATGGGCGCTTCTCTGCCCTCCAAAGAGGCCAACCTCTTCAAGCTTATCGTCAAATCATATGAAACCAAACAGTATAAAAAGGGCCTCAGAGCTGCTGATACCATTCTGAAAAAATTTCCAGACCATGGAGAAACTTTATCGATGAAGGGTTTGACACTAAATTGCATGGATCGTAAGTCTGAAGCATATGAACTTGTTCGTCAAGGATTAAAGAATGACCTAAAAAGTCATGTTTGCTGGCATGTTTATGGTCTCCTTTATCGATCAGACAGAGAATACAGGGAGGCAATCAAGTGTTATCGAAATGCACTGAAAAAAGATCCTGACAATATTGAAATTCTTCGTGACCTATCACTCCTACAGGCACAAATGCGAGATTTGACAGGCTTTGTCGAGACAAGACAACAACTTTTGACTTTGAAGCCAAATCATCGCATGAATTGGATTGGATTTTCTGTAGCCCATCATTTGAACTCCAATGCATCCAAAGCAGTTGAGATTTTGGAAGCGTATGAAGGGACTTTGGAAGAGGATTATCCTCCAGAAAATGAACGGTGTGAGCATGGAGAAATGCTTTTGTACAAGGTCTCGTTGTTAGATGAATGTGGGTTTCTCGAGAGAGCACTTGAGGAGTTGCACAAAAAAGAATTTAAAATTGTTGATAAGCTTGCATACAAAGAACAGGAGGTGTCACTTTTAGTAAAGCTTGGTCACTTAGAAGAAGGCGAAGCTTTGTACCGGGCATTACTTTCCATGAATCCTGATAATTATAGATACTATGAAGGACTCCAAAAGTGTGTTGGACTTTATTTAGAAGATGGGCAGTACTCGCCTGATCAAATAGACCAGTTAGATTCCTTGTACAAAGCACTTGTACAACAATACAAGTGGTCTTCCGCTGTTAAGAGAATACCTCTAGATTTTCTACAAGGTGACAAATTTCGAGAAGCAGCAGACAATTATATTAGGCCTCTCCTAACCAAGGGAGTTCCCTCTCTATTCTCTGATCTATCATCTTTGTACAATCACCCTGGGAAGGCAGACATTTTGGAACAACTTATTCTTGAGTTAGAGCAGTCAATTAGGATGTCTGGCCAATATCCTGGAGGGACTGACAAAGAACCCCCTTCAACTCTTATGTGGACTTTGTTTTTGTTGGCTCAGCATTATGACAGACGGGGTCAATTTGAAATTGCTCTTTCTAAAATTGATGAAGCTATAGAACATACACCCACAGTCATTGATCTATATTCTGTCAAGAGTCGGATACTGAAGCATGCTGGTGATTTGGTTGCTGCTGCTGCATTTGCAGATGAAGCTAGGTGTATGGATCTTGCTGATCGTTATGTTAATAGTGAGTGTGTTAAGCGGATGTTGCAGGCTGATCAGGTGTCTTTGGCCGAAAAAACTGCTGTATTGTTCACAAAGGATGGGGATCAACACAATAACCTTCATGATATGCAGTGCATGTGGTATGAGCTTGCCTCGGGCGAAAGTTATTTCCGCCAGGGTGATCTTGGACGGGCACTAAAAAAATTTTTAGCAGTGGAGAAGCATTATGCTGATATCACGGAAGACCAATTTGATTTTCATTCTTACTGCTTACGGAAAATGACTTTGCGTACTTATGTGGAAATGCTTAAATTTCAAGACCAATTGCATTCACATTCATATTTTCACAAAGCAGCAGCTGGGGCTATCAGATGCTATATTAAGTTGTATGATTCTCCCCCAAAGTCTACAGCAGAGGAAGATGATAACATGTCAAAGTTGCTTCCTTCTCAGAAGAAGAAAATGAGGCAAAAACAGAGAAAGGCAGAAGCAAGAGCCAAAAAAGAGGCAGAAGAAAAGAATGAAGAGTTAAGTTCAAGTGGGGTATCGAAGTCTGGGAAACGGCATGTAAAACCTGTTGATCCTGATCCAAATGGGGAGAAGTTGTTGCAGGTTGAAGATCCACTGTCAGAAGCTACTAAATACTTGAAGTTGCTGCAGAAGAATTCCCCTGATTCATTGGAGACACACTTGCTCTCTTTTGAATTGTATACAAGGAAACAAAAGACTTTGCTTGCCTTTCAGGCTGTGAAGCAGTTACTGAGATTGGACTCTGAACACCCTGATTCTCATCGTTGCTTGATTAAATTCTTCCATAAAGTGGGATCCATGAATGCTCCTGCGACTGACAGTGAGAAACTGATTTGGAGCGTCTTAGAGGCTGAGCGCCCAAATATTAGCCAGGTGCATGAGAAATCCCTGTTTGAGGCAAACAACTCTGTCCTTGAAAAACACAAAGATTCTTTGATGCATAGAGCAGCTTTTGTAGAAGTCTTGCACATTTTGGATTCAAACAGAAAATCTGAGGCTGTAAAGTTCATTGAAGATTCAACAAATAACATTGTGCCCAGAAATGGAGCACTCGGACCAATCAGGGAATGGAAACTTAAAGACTGTATTGCGGTTCACAATCTTCTTGGAACAGTTCTTGCTGATCAGGATGCTGCATTGAGATGGAAGGTGCGATGTATGGATTTCTTTCCATATTCTACGTACTTTGAGGGAAGGCACAGCTCTGCCTCTCCCAACTCGGCCTTCAACCAGTTACGTAAGAACTCTGAAAGTGAGAGTAGTAACCACATCACATCAAACGGAAAAGTAGAGGCTTTTAAAGATCTCACTATCTGA 2679 0.4113 MGASLPSKEANLFKLIVKSYETKQYKKGLRAADTILKKFPDHGETLSMKGLTLNCMDRKSEAYELVRQGLKNDLKSHVCWHVYGLLYRSDREYREAIKCYRNALKKDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFSVAHHLNSNASKAVEILEAYEGTLEEDYPPENERCEHGEMLLYKVSLLDECGFLERALEELHKKEFKIVDKLAYKEQEVSLLVKLGHLEEGEALYRALLSMNPDNYRYYEGLQKCVGLYLEDGQYSPDQIDQLDSLYKALVQQYKWSSAVKRIPLDFLQGDKFREAADNYIRPLLTKGVPSLFSDLSSLYNHPGKADILEQLILELEQSIRMSGQYPGGTDKEPPSTLMWTLFLLAQHYDRRGQFEIALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLVAAAAFADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAVLFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRTYVEMLKFQDQLHSHSYFHKAAAGAIRCYIKLYDSPPKSTAEEDDNMSKLLPSQKKKMRQKQRKAEARAKKEAEEKNEELSSSGVSKSGKRHVKPVDPDPNGEKLLQVEDPLSEATKYLKLLQKNSPDSLETHLLSFELYTRKQKTLLAFQAVKQLLRLDSEHPDSHRCLIKFFHKVGSMNAPATDSEKLIWSVLEAERPNISQVHEKSLFEANNSVLEKHKDSLMHRAAFVEVLHILDSNRKSEAVKFIEDSTNNIVPRNGALGPIREWKLKDCIAVHNLLGTVLADQDAALRWKVRCMDFFPYSTYFEGRHSSASPNSAFNQLRKNSESESSNHITSNGKVEAFKDLTI 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00169 892 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 1 826 - -
Phco1g00169 892 SUPERFAMILY TPR-like 84 263 IPR011990 GO:0005515
Phco1g00169 892 FunFam N-terminal acetyltransferase A, auxiliary subunit 2 503 - -
Phco1g00169 892 FunFam N-terminal acetyltransferase catalytic subunit (NAT1) 505 725 - -
Phco1g00169 892 MobiDBLite consensus disorder prediction 853 879 - -
Phco1g00169 892 MobiDBLite consensus disorder prediction 579 593 - -
Phco1g00169 892 SMART tpr_5 43 76 IPR019734 GO:0005515
Phco1g00169 892 SMART tpr_5 77 110 IPR019734 GO:0005515
Phco1g00169 892 SMART tpr_5 380 413 IPR019734 GO:0005515
Phco1g00169 892 SUPERFAMILY TPR-like 13 124 IPR011990 GO:0005515
Phco1g00169 892 PIRSF NAT_A 1 818 IPR021183 -
Phco1g00169 892 SUPERFAMILY TPR-like 381 707 IPR011990 GO:0005515
Phco1g00169 892 MobiDBLite consensus disorder prediction 606 622 - -
Phco1g00169 892 Gene3D - 2 503 - -
Phco1g00169 892 Pfam TPR repeat 84 123 - -
Phco1g00169 892 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Phco1g00169 892 Gene3D - 505 726 - -
Phco1g00169 892 MobiDBLite consensus disorder prediction 579 646 - -
Phco1g00169 892 Pfam N-terminal acetyltransferase A, auxiliary subunit 187 696 IPR021183 -
Phco1g00169 892 Coils Coil 596 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00169 Phco-Chr1 1204467 1218379 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00169 1 1204467 1218379 Phco1g00169 1 1204467 1218379 ECH