Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00166 ATGATTCTCAAAAGGGCAAATCCAAGTGAACTAAAAGGAAACACAGAACGTTTTGATTTAAGATTGGCTTGGGTTGACAACACACCAAGATTATACTTCTTCCTGCTGCTCAGAATCTTTGCAGAGATGAAGAAAGAAAGCAGTGTTACACTAAAAACTGGGGCGCCAACTGGTCGAATGACACGGGCTCGAGCTGCTGCTCATTGCTCATCAGGACAGCTACCCCCTTTGAAAGAGAGAGCACAACGAAATCAGAAGCAGTTATCCAGAGTCAATTCAAAAAGAGCAGCTTCTGATAATACATGTGTTCCGCGTAAAAAGAGGACTGCTCTTCATGATGTTACTAATGTTTGCTGTGAAAATGCGTACGAGAGTTGTTTCAACCCAAATAAAATTCAGGCTAAGAAAAGAAAGCTGTCTAAGAATAGTCAAATTAATGTGTCCAAGGTGGTTTCTTCTGTTGCTGTGGAGTCACTGCAATTTCAAGCTGACTCCAAAGCAAAGAGTTTACAGGAAGCAGTATTGAAATCAGAAGATACTATGTGCTCAAATAATTTGGAAACCAAAGAACTTCTGCGGTCAAGTTCCAATGAGTGTAACATGGATGTTAGACTGCCTGAAAGTCAGATGTCCGGAATATCTGCTCAGCCTTTGATTTCTCAGAAGAAAGACAAGAAAGATAACCTTTCTAAAGGTTTGACTGCGTTGAAGGATCAAGAATTCACTAGCATAGACGATGATCTTGGAGATCCTCAATTGTGCAGCCTCTATGCTGCTGATATCTATGATACCATGCGTGTTGCTGAGCTTGCAAGAAGGCCTTATCCTAATTTTATGGAGACGGTGCAGCAAGATATCACTCAAAGCATGCGTGGAATACTGGTTGATTGGCTTGTAGAGGTTTCAGAGGAATACAAATTGGTTACAGACACTCTTTACCTCACTGTGTACCTCATAGATTGGTTCCTCTCCAAAAACTACATTGAAAGACAGCGACTTCAGCTACTTGGTATCACGTGCATGCTAATTGCCTCGAAGTATGAAGAAATTAACGCCCCGCGCATTGAAGATTTCTGCTTCATTACTGACAATACATACACCAAAGCTGAGGTACTGAAAATGGAGAGTCAAGTGTTGAAGTCGTCTGAATATCAACTGTTTGCTCCCACTATAAAAACATTTCTCAGGAGGTTTCTTCGGGCAGCACAAGCTTCATACGAGGACCCTAGCCTTGAATTAGAGTACCTGGCCAATTACCTAGCTGAAATAACACTTATGGACTATGGTTTCTTGAATTTCCTCCCCTCTATCATTGCTGCATCAGCTGTATTTCTTGCCCGGTGGACTCTGGATCAGTCAAACCACCCATGGAATCCAACTCTTCAACACTATGCCAGTTACAAAGCATCAGATTTGAAAACCACAGTTCTTGCATTGCAAGACCTGCAGCTGAATACTGATGATTGCCCTCTAACTGCCATTCGCACAAAGTATAGACAAGATAAGTTCAAATGTGTAGCAGCTTTGTCTTCACCAAAACTGCTTGAAACTTTGTTCTGA 1560 0.4167 MILKRANPSELKGNTERFDLRLAWVDNTPRLYFFLLLRIFAEMKKESSVTLKTGAPTGRMTRARAAAHCSSGQLPPLKERAQRNQKQLSRVNSKRAASDNTCVPRKKRTALHDVTNVCCENAYESCFNPNKIQAKKRKLSKNSQINVSKVVSSVAVESLQFQADSKAKSLQEAVLKSEDTMCSNNLETKELLRSSSNECNMDVRLPESQMSGISAQPLISQKKDKKDNLSKGLTALKDQEFTSIDDDLGDPQLCSLYAADIYDTMRVAELARRPYPNFMETVQQDITQSMRGILVDWLVEVSEEYKLVTDTLYLTVYLIDWFLSKNYIERQRLQLLGITCMLIASKYEEINAPRIEDFCFITDNTYTKAEVLKMESQVLKSSEYQLFAPTIKTFLRRFLRAAQASYEDPSLELEYLANYLAEITLMDYGFLNFLPSIIAASAVFLARWTLDQSNHPWNPTLQHYASYKASDLKTTVLALQDLQLNTDDCPLTAIRTKYRQDKFKCVAALSSPKLLETLF 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00166 519 CDD CYCLIN_AtCycA-like_rpt2 389 503 - -
Phco1g00166 519 Pfam Cyclin, N-terminal domain 260 385 IPR006671 -
Phco1g00166 519 CDD CYCLIN_AtCycA_like_rpt1 250 385 - -
Phco1g00166 519 PANTHER CYCLINS 206 500 IPR039361 -
Phco1g00166 519 Pfam Cyclin, C-terminal domain 389 511 IPR004367 -
Phco1g00166 519 PIRSF Cyclin_A_B_D_E 65 518 IPR046965 GO:0016538|GO:0044772
Phco1g00166 519 Coils Coil 219 239 - -
Phco1g00166 519 SUPERFAMILY Cyclin-like 389 514 IPR036915 -
Phco1g00166 519 SUPERFAMILY Cyclin-like 249 385 IPR036915 -
Phco1g00166 519 Gene3D - 260 508 - -
Phco1g00166 519 FunFam Cyclin A1 376 508 - -
Phco1g00166 519 Gene3D - 274 387 - -
Phco1g00166 519 SMART Cyclin_C_2 389 512 IPR004367 -
Phco1g00166 519 SMART cyclin_7 296 380 IPR013763 -
Phco1g00166 519 SMART cyclin_7 393 481 IPR013763 -
Phco1g00166 519 FunFam Mitotic cyclin 6 274 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00166 Phco-Chr1 1181299 1186730 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00166 1 1181299 1186730 Phco1g00166 1 1181299 1186730 ECH