Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00152 ATGATGGGATCCGGGTCGGGTTCTCTGGTGTGGTTCCGGAAGGGTATTCGGATCCACGACAACCCGGCTCTCGAGTTCGCGTCCCGAAGTGCCTCTCATCTCTACCCTGTCTTTGTCATCGACCCGCATTATATGAAACCCGACCCGAATGCTCCCTCACCTGGGTCATCGCGCGCGGGTCTGAACCGCATCAAGTTCTTGCTGGAGAGCCTCGTGGACCTTGATCTCAACCTCAAGAACCTTGGCTCGCGACTTTTGATTCTCAAGGGTGACCCAGCTGAAGTTGTCATTCAATGCTTGAAGGAGTGGAATGTCAACAAGCTGTGCTTTGAGTACGACACTGAACCGTATTATCAGGCTCTGGATGTTAAAGTTAAGAATTTTGCACTTGCTGCTGGAATTGAGGTTTTCTCTCCTGTGAGTCACACACTCTTCAACCCCACGGATGTTATACACAAGAACGGAGGGAAGCCACCCCTTAGTTATCAGTCGTTTGTCAAGCTTGCTGGGGAACCACCCTTTCCTCTCACAACCATGTACTCTTCACTTCCTCCGGTTGGCCATCTAGGAAGTTGTGATATTTCTGAAGTTCCAACGATCACAGATCTTGGATATGGAGATGCTGAACAGGATGAGTTCTCTCCTTTCAAAGGGGGTGAGTCAGAAGCCTTGAGGAGATTGGATGAATGCATGAAAGACAAGGAGTGGGTGGCAAACTTTGAGAAACCCAAGGGCAATCCATCTGCATTTCTTAAGCCGGCAACAACTGTTTTATCACCCTACCTGAAATTTGGTTGTCTATCTTCCAGATATTTCTACAGGCGAATTCAGGATATATATAAAAGTATGCCAAAGCATACATCACCGCCCGTTTCTCTTACAGGACAGTTGTTGTGGCGAGAATTCTTTTACACGGCTGCTTTTGGGACTCCAAATTTTGACAGAATGAAAGGCAATAGGATATGCAAGCAGATTCCTTGGAAGGATGATGATAAACTGCTGGAGGCTTGGAGGGAGGCTAGGACAGGATTTCCTTGGATTGATGCTATCATGATCCAGCTACGCAAATGGGGTTGGATGCATCATTTGGCCCGGCATTCTGTCGCATGTTTTCTAACTCGTGGCGATCTGTTTGTTCACTGGGAAAAAGGACGGGATGTCTTTGAGAGGCTTCTGATTGATTCCGATTGGGCAATTAATAACGGAAACTGGATGTGGCTTTCTTGTTCATCTTTCTTTTATCAGTACAATCGTATTTATTCCCCAACCACATTTGGCAAAAAGTATGACCCTAATGGTGACTATATTAGGCATTTTCTCCCAGTCTTAAAAGATATGCCCAGAGAGTACATTTATGAACCCTGGACGGCTCCTAAAAGTATCCAGACCAAAGCGAATTGCATAGTTGGCAAAGACTACCCAATGCCAGTTGTTTCTCATGATTCAGCGAGTAAAGAGTGCCGAGGGAAAATGGGGGAGGCATATGCATTGAATAAAAAATTGAATGGTTTGGTTAGTGAAGATGATCTGAAAAACTTGAGGAGGAAATTAGATGAGAGTGAAAGGCAAGAGCCTGAAGCTAAAAGATATAAGCAAAAACTGTGA 1605 0.4555 MMGSGSGSLVWFRKGIRIHDNPALEFASRSASHLYPVFVIDPHYMKPDPNAPSPGSSRAGLNRIKFLLESLVDLDLNLKNLGSRLLILKGDPAEVVIQCLKEWNVNKLCFEYDTEPYYQALDVKVKNFALAAGIEVFSPVSHTLFNPTDVIHKNGGKPPLSYQSFVKLAGEPPFPLTTMYSSLPPVGHLGSCDISEVPTITDLGYGDAEQDEFSPFKGGESEALRRLDECMKDKEWVANFEKPKGNPSAFLKPATTVLSPYLKFGCLSSRYFYRRIQDIYKSMPKHTSPPVSLTGQLLWREFFYTAAFGTPNFDRMKGNRICKQIPWKDDDKLLEAWREARTGFPWIDAIMIQLRKWGWMHHLARHSVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQYNRIYSPTTFGKKYDPNGDYIRHFLPVLKDMPREYIYEPWTAPKSIQTKANCIVGKDYPMPVVSHDSASKECRGKMGEAYALNKKLNGLVSEDDLKNLRRKLDESERQEPEAKRYKQKL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00152 534 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 311 534 - -
Phco1g00152 534 PANTHER CRYPTOCHROME 8 499 IPR002081 -
Phco1g00152 534 FunFam Cryptochrome-1 311 532 - -
Phco1g00152 534 Gene3D HUPs 4 141 IPR014729 -
Phco1g00152 534 Pfam FAD binding domain of DNA photolyase 295 491 IPR005101 -
Phco1g00152 534 Gene3D - 142 309 - -
Phco1g00152 534 Pfam DNA photolyase 8 169 IPR006050 -
Phco1g00152 534 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 208 497 IPR036134 -
Phco1g00152 534 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 188 IPR036155 -
Phco1g00152 534 Coils Coil 510 530 - -
Phco1g00152 534 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 6 144 IPR006050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00152 Phco-Chr1 1070498 1075537 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00152 1 1070498 1075537 Phco1g00152 1 1070498 1075537 ECH