Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00147 ATGATGTGGTCGTGGTCTTGCATGGAAGCGATTCCCAAGGAGAATCGAATCAGCCCACTTCCCTTCCTCTTTATTCTTCTTTACATATATAAACCATCCCCCCTATCACATTTTCTCATCAGCAAATCCTCTACAGCTTCTTCTGCTTCTCTAATACTCCAACTCACTACATTATCTTCAGTGATCTGCAGAGAAGTAAATATGAGCAGACCGGGAGACTGGAACTGCAGGTCATGCCAGCACCTGAACTTTCAGAGGAGAGATTCGTGCCAGCGATGTGGGGACTCAAAATATGGAGATAGAATTGATTTTGGTGCGTTTGGAGGAAGAGGAGGGTCTTCATTTGGGTTAACTGGGTCAGATGTTCGCCCTGGTGACTGGTACTGTGCTGCTGCTAACTGTGGTGCGCACAACTTTGCTAGCCGCTCGAGCTGCTTCAAGTGTGGTGCTTTTAAGGATGACTTGGCTGGAGGCTATAACAGTGACATCTTGCGCTCAAGAGCTTTTGGTGGCAGTGGAAGACCTGGATGGAAATCTGGTGATTGGATATGCAGCAGATCAGGATGCAATGAGCACAACTTCGCTAGCCGAATGGAATGTTTTAAATGCAGTGCTCCAAGGGACACGTACTAG 633 0.4724 MMWSWSCMEAIPKENRISPLPFLFILLYIYKPSPLSHFLISKSSTASSASLILQLTTLSSVICREVNMSRPGDWNCRSCQHLNFQRRDSCQRCGDSKYGDRIDFGAFGGRGGSSFGLTGSDVRPGDWYCAAANCGAHNFASRSSCFKCGAFKDDLAGGYNSDILRSRAFGGSGRPGWKSGDWICSRSGCNEHNFASRMECFKCSAPRDTY 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00147 210 SUPERFAMILY Ran binding protein zinc finger-like 172 208 IPR036443 -
Phco1g00147 210 ProSitePatterns Zinc finger RanBP2-type signature. 182 203 IPR001876 -
Phco1g00147 210 ProSiteProfiles Zinc finger RanBP2 type profile. 123 154 IPR001876 -
Phco1g00147 210 Pfam Zn-finger in Ran binding protein and others 123 150 IPR001876 -
Phco1g00147 210 Pfam Zn-finger in Ran binding protein and others 178 207 IPR001876 -
Phco1g00147 210 ProSitePatterns Zinc finger RanBP2-type signature. 127 148 IPR001876 -
Phco1g00147 210 ProSiteProfiles Zinc finger RanBP2 type profile. 178 209 IPR001876 -
Phco1g00147 210 SUPERFAMILY Ran binding protein zinc finger-like 68 100 IPR036443 -
Phco1g00147 210 SUPERFAMILY Ran binding protein zinc finger-like 118 153 IPR036443 -
Phco1g00147 210 PANTHER ZINC FINGER PROTEIN 121 208 - -
Phco1g00147 210 SMART zf_4 72 96 IPR001876 -
Phco1g00147 210 SMART zf_4 180 206 IPR001876 -
Phco1g00147 210 SMART zf_4 125 151 IPR001876 -
Phco1g00147 210 FunFam Ran-binding zinc finger protein 171 209 - -
Phco1g00147 210 Gene3D - 60 99 - -
Phco1g00147 210 Gene3D - 174 209 - -
Phco1g00147 210 Gene3D - 118 154 - -
Phco1g00147 210 ProSitePatterns Zinc finger RanBP2-type signature. 74 93 IPR001876 -
Phco1g00147 210 ProSiteProfiles Zinc finger RanBP2 type profile. 70 99 IPR001876 -
Phco1g00147 210 FunFam Ran-binding zinc finger protein 117 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00147 Phco-Chr1 1033668 1037123 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00147 1 1033668 1037123 Phco1g00147 1 1033668 1037123 ECH