Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00136 ATGATTCCATTTTATGGAATGAGGGATTTTCATACCAACAAGGCCGTTGCCTCATTCCTTTGTCTATGTGCTGTGTGCCCATGGAAGAAACGTTCCCGAATTCTACTTCAATTTCTCATTGGTCTTGTCAAAGGAGAGTTGAAAGCTGGAATGGGAAGGGCTTTTCGGACTATTCCACGGATGGGAGAATTGAAGGACACCGAGGCTTACGAGGAAGAGCTCCTCGATTACGAAGAAGAAGATGAGAAAGCTCCCGATTCTGCCAAGCCTGCCGAATCTGGCAAGAAGGGTTATGTTGGCATCCATAGTTCGGGTTTTCGAGACTTCCTGTTGAAGCCAGAGCTTCTGCGAGCCATTGTAGATTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATGCATCCCTCAAGCAATCTTAGGAATGGATGTCATTTGTCAAGCAAAATCTGGGATGGGAAAGACTGCTGTTTTTGTTCTTTCTACACTTCAGCAAGTTGATCCTGTTCCTGGTCAAGTTGCAGCTCTTGTTCTTTGCCACACAAGAGAACTGGCTTATCAGATTTGCCATGAATTTGAGAGATTCAGCACATATCTTTCTGATATAAAGGCTGCTGTTTTCTATGGTGGCGTCAATATCAAGGTTCACAAAGAATTGCTCAAGAATGAATGTCCTCATATTGTTGTTGGAACTCCTGGGAGGATTCTTGCTCTGGCTAGAGATAAGGACCTTGGTTTAAAGAACGTGAGGCATTTTATACTTGATGAGTGCGACAAGATGCTCGAATCACTTGATATGAGAAGAGATGTCCAAGAGATTTTCAAATTGACCCCTCATGATAAACAAGTGATGATGTTTTCAGCTACACTTAGTAAAGAGATTCGACCCGTTTGCAAGAAATTTATGCAAGATCCTATGGAAATCTATGTGGATGATGAGGCAAAGTTGACTCTTCATGGTCTTGTCCAGCACTACATCAAATTGCAAGAGACAGAGAAGAACCGGAAGTTGAATGATCTTCTTGATGCTCTGGACTTCAACCAAGTAGTTATTTTTGTCAAGAGTGTCAGCAGAGCTGCAGAGTTGAACAAGTTGCTCGTGGAATGTAACTTTCCATCCATCTGCATACATTCTGGGATGTCACAGGAAGAGAGATTGAAACGATACAAAGGCTTCAAGGAAGGGAAGCAAAGGATTCTCGTGGCAACTGACTTAGTAGGGAGGGGGATTGACATAGAACGTGTTAATATAGTTATTAATTATGACATGCCTGATTCTGCTGATACTTACTTGCACAGGGTGGGAAGAGCTGGTAGATTTGGCACGAAGGGGCTTGCAATTACTTTTGTCTCCTCCACTGCCGACTCTGAAGTTCTTAATCAGGTGCAATCTAGGTTTGAAGTTGATATTAAGGAGCTTCCTGAACAAATTGACACTTCGACATATATGCCAAACTAA 1458 0.4259 MIPFYGMRDFHTNKAVASFLCLCAVCPWKKRSRILLQFLIGLVKGELKAGMGRAFRTIPRMGELKDTEAYEEELLDYEEEDEKAPDSAKPAESGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQVDPVPGQVAALVLCHTRELAYQICHEFERFSTYLSDIKAAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQETEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTADSEVLNQVQSRFEVDIKELPEQIDTSTYMPN 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00136 485 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 336 481 IPR001650 -
Phco1g00136 485 SMART helicmild6 360 441 IPR001650 -
Phco1g00136 485 Pfam Helicase conserved C-terminal domain 334 441 IPR001650 -
Phco1g00136 485 FunFam DEAD-box ATP-dependent RNA helicase 317 485 - -
Phco1g00136 485 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 135 308 IPR014001 -
Phco1g00136 485 SMART ultradead3 123 324 IPR014001 -
Phco1g00136 485 FunFam DEAD-box ATP-dependent RNA helicase 56-like 92 310 - -
Phco1g00136 485 CDD DEADc_DDX39 103 310 - -
Phco1g00136 485 CDD SF2_C_DEAD 321 450 - -
Phco1g00136 485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 455 IPR027417 -
Phco1g00136 485 Gene3D - 100 316 IPR027417 -
Phco1g00136 485 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 102 459 - -
Phco1g00136 485 Pfam DEAD/DEAH box helicase 129 294 IPR011545 GO:0003676|GO:0005524
Phco1g00136 485 Gene3D - 317 485 IPR027417 -
Phco1g00136 485 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 104 132 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00136 Phco-Chr1 980457 987981 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00136 1 980457 987981 Phco1g00136 1 980457 987981 ECH