Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00134 ATGCCATCTACTTGCACGGACCACTTGAGTAATAAGAGTGGAGTGAAGCATCTGAAAGTTCTGGCCAACATGGTGCAATCAAGGAAATTCAGAGGTGTGAGGCAACGCCATTGGGGCTCCTGGGTTTCTGAGATTCGTCACCCATTATTGAAAAGGAGGGTGTGGCTTGGGACATTTGAGACAGCTGAGGAAGCAGCAAGAGCATATGACGAGGCAGCTATTTTGATGAGTGGAAGAAACGCTAAAACAAACTTCCCAGTTGGTGAAAACCAACTGGTGAATCACAGTTCCTCTACTTCCTCTTCTTCATCCACCACCACTACATTGTCTGAAGTTCTGAGTGCAAAGCTTAGGAAGTGCTGCAAGTCCCCCTCACCTTCCCTCACTTGCCTAAGGCTTGACACTGAGAATTCCCACATAGGGGTGTGGCAGAAGAGAGCAGGCCCTCGTTCTGACTCTAACTGGATCATGATGGTTGAGTTGGAAAAAAAGAACAGCGAGGGTGATCAAGATCAATGCCCTTCTTCTGACTCGGAAGTTCCTGTTGTTGTTGTTGATCATCATGCCCCAGAGAAGATAAAGCCCGAGGAAAGTAATGGCTTAGATGAGGAGCAGAGAATGGCCCTGCAGATGATAGAGGAACTTCTGAATAGGAATTGA 660 0.4727 MPSTCTDHLSNKSGVKHLKVLANMVQSRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPVGENQLVNHSSSTSSSSSTTTTLSEVLSAKLRKCCKSPSPSLTCLRLDTENSHIGVWQKRAGPRSDSNWIMMVELEKKNSEGDQDQCPSSDSEVPVVVVDHHAPEKIKPEESNGLDEEQRMALQMIEELLNRN 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00134 219 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Phco1g00134 219 Pfam AP2 domain 29 77 IPR001471 GO:0003700|GO:0006355
Phco1g00134 219 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Phco1g00134 219 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Phco1g00134 219 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Phco1g00134 219 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 8 171 - -
Phco1g00134 219 CDD AP2 29 87 IPR001471 GO:0003700|GO:0006355
Phco1g00134 219 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Phco1g00134 219 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Phco1g00134 219 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00134 Phco-Chr1 968685 970132 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco1g00134 AP2 1.3e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00134 1 968685 970132 Phco1g00134 1 968685 970132 ECH