Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00113 ATGGGCGGAATAGTTCATTTCAAATTTTACTTAACATGGCACGAGCTCTTGCTACTCTCCCTTTTCTCAAGGGTTACTTTTGCTATCATGGAGCTTGTTGCTCATGTTACCCCGGATAGTAATGATGTGATACCTTATTCAGGAACGCAACCCAATAAGCGGATGAGAAAAAAGTCTATGGTCTGGGACTACTTCACAGTAGAAGCTCTTGGAGCTGGATGTACCAGGGCTTACTGTAACCAATGCAAAAAATCATTTTCTTATATAACTGATTCAAAACTAGCTGGTACAAGCCATCTGAAAAGACACATCTCTTTGGGAATCTGTCAAGTACTTCGGGAGAAAAACCAACAAAACACATATCCCAAAACAGGTGGTAATCAATATACTGCCAATCCATCCAAGAAACGACCAAGAGAAAATTCTAGGTTTACTGGTAATGGTATCTCATTTGATGAGGAGCGTTGCAACCATGATGTTGCCAAAATGGTAATTTTACATGATTATCCTCTTCATATTGTGAAGCAACAGGGTTTCATTGATTTTGTCCGGATTCTTCAACCCCAGTTTAATCCATCATGTCTAAATTCTGTTGAAAGGGATTGTATTGCTATTTACCTGAGGAAAAAGCAAAATCTGTTGAATGTTATTAATGTGATTCCTGGACAAGTCAACCTGACATTGGAATTGTGCACTTCGAACCAGGCAATGGGCTATGTTTTTGTTCGAGGACACTTCGTTGATAATGATTGGAACTTACATCGTCCTATTCTCAATGTTGTTACAGTACCATTTCCTGGTTCTGAAGACTCTTTAAATCAAACTTTAGTGACCTGCTTATCCGATTGGCATTTGGAGGGTCGGCTGTTTACCCTCACTCTTGATAAATCCTTTTCCAGTGAGAATGTGATAGAAAATCTGAGAGACCTACTCTCTGTTAAGAACCCTGCCATACTCAATGGTCAGTTGTTAAACCGGAATTGTTATGCTCGTGTGCTTAGTCGCCTTGCAGCTGATGCACTATGGGCAATGAGAGAAACTATTAGCAAGGTTCGCGACAGTGTAAAGCATGTGAAGTCTTCCGAACCCCATAAAGAGAAGTTTATCGACTTGAAGCAACAATTACAAGTACCTAGTGTGGTGAATCTTTCAATTGATGACCCCTGTAAATGGGACACAACTTATCTTATGCTTGTAGCTGCCTGTGAATTAAAGGAAATCTTCATCTGCCTTGATACCACTGATCCTGATTACAGAATGACTCTAACAATGGATGACTGGAAGAAGGTTGAAACTCTCTGCACATATTTGAAGTATTTGTATGATGCAGCCAAAATTTTGACTCAGCAACCATACCCAACTTCAAACTTATTTTTTGCTGAAGTGTCAAAAGTTCAGGTGGAGTTGACACAAGCAGCCTTGATCCAGGATCCTTTTATAAGAAGTTTAATTTTTCCTTTGCATGAGAACTTTGACCAATATTGGAGAGAAAGCTGCATCATCTTGGCAATTGCTGTAGCTATGGACCCAAGGCATAAAATGAAACTTGTGGAATTTACCTTTGCCAAGACATTTGGTGAGAATGCTGCGGCCTGGATAAAGATAGTTGAGGATGGTCTTCGTGATCTATTCATTGAATATAGCACCCAAATGTTTCTTACAGCAACAAATAATGATGATGGGGATGACATTATGATAAAAGAAACATGTCAAGAAGGGTCTATTGACTGCTCACTTTTTGTTGATGGGAATGAACTTTCCGATTATGAATTTTATATATCTGATTTTACTGGTAACCCTCAATTTAAGTCAGAATTGGAAGAGTATCTGGAAGAGCCTCTGCTGACCAGAGCAGAGGAATTTGATATTCTGAACTGGTGGAGAGTAAATGGATTGAAATACCCGACATTGTCTAGAATAGCATCTGATATTTTGTCTTTACCAGTTTCCACTCTGTCTGCAGGTTCTGTTTTTGACACCCAGATTAGAACAATAGATAGCTACCGTAGTTCTTTAAGCTCCCTCACTCTTGAGGCCCTTATTTGTGCCAAGGATTGGTTCCAGTCAGAATGA 2073 0.3946 MGGIVHFKFYLTWHELLLLSLFSRVTFAIMELVAHVTPDSNDVIPYSGTQPNKRMRKKSMVWDYFTVEALGAGCTRAYCNQCKKSFSYITDSKLAGTSHLKRHISLGICQVLREKNQQNTYPKTGGNQYTANPSKKRPRENSRFTGNGISFDEERCNHDVAKMVILHDYPLHIVKQQGFIDFVRILQPQFNPSCLNSVERDCIAIYLRKKQNLLNVINVIPGQVNLTLELCTSNQAMGYVFVRGHFVDNDWNLHRPILNVVTVPFPGSEDSLNQTLVTCLSDWHLEGRLFTLTLDKSFSSENVIENLRDLLSVKNPAILNGQLLNRNCYARVLSRLAADALWAMRETISKVRDSVKHVKSSEPHKEKFIDLKQQLQVPSVVNLSIDDPCKWDTTYLMLVAACELKEIFICLDTTDPDYRMTLTMDDWKKVETLCTYLKYLYDAAKILTQQPYPTSNLFFAEVSKVQVELTQAALIQDPFIRSLIFPLHENFDQYWRESCIILAIAVAMDPRHKMKLVEFTFAKTFGENAAAWIKIVEDGLRDLFIEYSTQMFLTATNNDDGDDIMIKETCQEGSIDCSLFVDGNELSDYEFYISDFTGNPQFKSELEEYLEEPLLTRAEEFDILNWWRVNGLKYPTLSRIASDILSLPVSTLSAGSVFDTQIRTIDSYRSSLSSLTLEALICAKDWFQSE 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00113 690 SUPERFAMILY beta-beta-alpha zinc fingers 59 113 IPR036236 -
Phco1g00113 690 PANTHER BED FINGER-RELATED 201 689 IPR045259 -
Phco1g00113 690 SUPERFAMILY Ribonuclease H-like 221 688 IPR012337 -
Phco1g00113 690 Pfam hAT family C-terminal dimerisation region 605 687 IPR008906 GO:0046983
Phco1g00113 690 MobiDBLite consensus disorder prediction 119 143 - -
Phco1g00113 690 Pfam Domain of unknown function (DUF4413) 449 547 IPR025525 GO:0003677
Phco1g00113 690 SMART bed5 56 112 - -
Phco1g00113 690 ProSiteProfiles Zinc finger BED-type profile. 56 116 IPR003656 GO:0003677
Phco1g00113 690 MobiDBLite consensus disorder prediction 119 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00113 Phco-Chr1 840651 848339 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00113 1 840651 848339 Phco1g00113 1 840651 848339 ECH