Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00110 ATGCCCCCAAGATCAGGAAAAGGGAAATCAAATAAGGCAAAGGCAGAGAAGAAGAAAAAGGAAGAGAAAGCAGCAGCACCTTCTCTTGTTGACATCACTGTGGTCACTCCATATGATACAAGAATTCTCTTGAAGGGTATCTCTACTGATAAGATACTTGATGTGAGGAAACTATTGGCTGTGAAGGTGGAGACATGCCATTTCACAAACTATTCTTTATCCCATGAGGCAAAAGGTCATAAGTTAAATGACAGAGTGGAAATTGTTACCCTAAAGCCATGTCTTCTCAGAATGGTTGAAGAGGATTACACGGAGGAGGCCCAAGCATCTGCGCACGTGCGGAGGGTCTTGGACATTGTGGCCTGCACAACAAGGTTTGGTAGGCCCAAACGGAGTTTATCAAGCCCAGATTCAAGGCCCAAGAAAAACGGGAAGGCCCAACATCAGAACAAGACGAGTTTGAGCCCACCCGAGACACCGAATGCGGAATCCCGGGTCGGGTTACCGTCGTCGGAGGCGCCACTCTCGGCGATCTCCGATAACGTGGGAATGAAGGCCATTCACCCGACGCCGAAGCTCTCAGATTTCTACGAATTCTTCTCCTTGTCTCACATCTCTCCCCCCATTTTACAATTGAAGAGGTGTGAAGTGAAGGATGAAGATGTTAGGCGCAAGGGAGATTACTTTCAGCTTCAGGTTAAAATATGCAATGGAAAGGTAATAGAAGTGGTTGCTTCAGAGAAAGGGTTTTACACTGTAGGGAAGCAGTCTCTGCACAGTCACACCTTGGTTGATCTTCTCCAACAGCTCAGCCGAGCCTTTGCTAATGCATATGAATCTTTGATGAAAGCCTTTTTGGAACGTAATAAGTTTGGAAATCTTCCATATGGATTCCGAGCAAATACATGGCTTGTCCCTCCATCTGTAGCCGAGTCTCCTTCAAGCTTTCCTGCATTGCCCGCAGAGGATGAAAACTGGGGTGGTAATGGTGGCGGCGGAGGAAGAAATGGAGAATTCGATCTTAGACCATGGGCAACGGATTTTGCAATATTGGCCTCTCTTCCTTGCAAAACTGAGGAAGAGAGATTGGTCAGGGATAGGAAAGCATTTCTGCTTCACAATCAATTTGTTGATACCTCAATATTTAAGGCTGTCGCGGCTATACAACTTGTTATGGAGTCCAACTCAAACATGAAGAGTGAATTGAATTCTTCTCCCAGTTCTGTTCTGCATGAAGATCACGTGGGAGACTTATCCATTATAGTCAAACGTGACATCCAGGATGGAAATAAAAAGCATGATTCTATACCTGATGAATCCATCGTGCATAAGGAGGATGTTCAGAAGAATTTAATCAAAGGATTGGCTGCTGATGAAAGTGTAATTGTTCATGATACTTCTTCCTTGGCTGTCGTTGTTGTACACCACTGTGGATATACTGCAACAGTAAAGGTTGTGGGTAATGTGAACATGAGGAAGCTTAAAGTTCGAGACATTGAGATAAATGATCAGCCAGATGGCGGGGCAAATGCTCTCAACACCAACAGTTTGAGGCTACTGCTTCACAAGTCTGGATCTGATTCATTAGAAGGGAATATATCATCCCTATCAAATTCGGATGACTTAGATGCTACTAAAAGCCTTGTTCGGAAGGTTGTTCAAGAAGACATAGAAAAAATAAAGGAGGAGCCAAGTGTTTCAAAAAGGTCTATTCGATGGGAACTTGGTTCCTGTTGGATGCAGCATTTGCAAAAACAGGAAATTTCATCTGATAACAGTTCCAAAAACAAAGAAGATGGCAATGACGCTGAGCAAGCTGTTAAAGGTCTTGGAAAGCAATTTAAATTTTTGAAGAAGAGAGAGAAGAAATCAAATAATGTAGATGGTGCAGATTCTCGAGAGCAAAATGACTCTAGACCTGGAAATGTGAATGATGATGATGATAAAGTTGAGCCGAACAGCGGTGACTTAAGTAACTCTAATGATTTAGAGAAACTACTTTCTGAAGAAGCATTTTTGCGTCTCAAAGAATCTGGAACTGGCCTTCACACGAAGTCAGTGGATGAGCTTATCAGCATGGCAGACAAGTTTTATGATGAAGTTGCCTTGCCAAAGCTGGCTATGGACTTTGGATCACTTGAACTTTCTCCAGTGGATGGGCGAACATTGACCGACTTTATGCATTTAAGAGGATTAAAGATGCGATCTTTGGGTCAAGTGGTTAAACTTGCTGAGAATCTTCCTCACATACAATCCCTTTGTATTCATGAGATGATTACTCGAGCTTTCAAGCATCAACTTAAAGCAGTTATTGCCTCTGTTGACAATGTAGCTGATCTATCTGCAGCCATTGCATCAACACTAAATTTCTTACTTGGTGGGTGTCGTACAGAAGATACTGATCAAAGTTTGAATGATGATCATAATCTCAGAATTCAATGGCTACGAATGTTTTTGTCCCAAAGATTTGGGTGGACACTGAATGATGAATTTCAACATTTGAGGAAGTTATCGATTCTCAGAGGGCTATGTCACAAGGTTGGATTGGAAATATTCCCTAGAGATTATGACATGGAGTCTAGTAAGCCCTTTGAGAAAAATGATATTATCAGCTTGGTTCCTGTTTGCAAGCACGTAGGGTGCTCCTCAATTGATGGACGCAATTTATTGGAGTCTTCAAAAATTGCTCTTGATAAAGGAAAGCTTGAGGATGCTGTAAATTACGGAACAAAGGCATTGGCTAAAATGATGGTTGTTTGTGGACCCTATCATCGAAATACAGCAAGTGCATATAGTCTCCTAGCTGTGGTTCTCTACCATACTGGAGATTTTAACCAGGCCACCATTTATCAGCAAAAGGCCTTGGATATAAATGAGAGGGAGCTTGGTCTTGACCACCCTGACACTATGAAAAGCTACGGGGATCTTTCTGTTTTTTATTATCGTTTGCAACACATTGAGCTGGCTCTGAAGTATGTTAATCGTGCTCTATTCCTTCTTCACTTTACATGTGGGCTGTCTCATCCAAACACAGCTGCAACATATATAAATGTGGCTATGATGGAAGAGGGCATGGGAAATGTTCATGTGGCACTCAGATACTTGCATGAAGCTCTTAAATGCAACAAAAGATTGTTAGGAGCAGATCATATACAGACTGCCGCAAGCTATCACGCCATAGCTATAGCTCTTTCATTGATGGATGCATTTTCTCTAAGTGTGCAACATGAACAAACTACACTGAAGATACTTCAAGCAAAGCTTGGATCAGAAGACCTTCGTACACAGGATGCTGCGGCATGGCTTGAATATTTTGAATCAAAAGCCATAGAGCAGCAAGAAGCAGCTAAAAATGGAACTCCAAAGCCTGATGCATCCATTGCAAGTAAAGGTCACCTTAGCGTGTCAGATCTCCTGGATTTTATCAGTCCTGACCCTAAAAGAAATGATGCACAGAGAAAACAGAGGCGTGCAAAGTTGCTCCCGACAAGTGATAACAGTCAAGAACATGAAGATGCAGTAGTTGAGGAGAGCATTGTTTTTTATGACTCAAGAGATGCTCCAAGCATGGTTGAAGGGAATATAGAAGAAACCAATGACACACGACGTGATTCTCAAGTACCAAAAGAAAATGGTGATTTCACTAGTTACAGGCCAGTGACAAGTGAAGTTGTTAATGAGGCATCATCCGATGAGGGTTGGCAAGAAGCCAATTCAAAAGGGCGATCAGGAAATGCTGCTAACCGGAAGTTTGGACACAAAAAGCGACCTCTTCTATCAAAGCTCAGCATTAATGGTTCTAATAATTACATTTACAGGGAAAGCAGTTCTAGGAATGAGATTACTTCACAACCACAAAGAGGAGTTCCTATTTCATCTCCATCTAGACAACCAAAAGCTAGAATCATAGCCTTGAACGAGGATTCTGTTAATTATTCAACAAAAGCTTCTGTGTCAAAAATTTCATCTCCAGCATCTCTAAGTTCCTTGGCTTCAAAGTCTATATCTTACAAAGAAGTAGCTCTGGCTCCACCAGGTACAGTTTTAAAGCCGCTGTTGGAAAAGGCTGAGATGGACAAGGTTAATGCTGAAGACGAGATATGCAGCAGTCCATCTGTGACATCTATCAACGAAGGTACGTGCCAAAGTTCCATAGTTAATGCAGTTTCTCAGAACGGTGAAACAGAGGAAACTCAAGAAATTGAACCTCAACAAGAAAATTCTGCATTGGAAGTTGAGAAGGTTTCCCTTGCTTCTTCTGATCAGGAAAAACCTACAGAAACAAATGGCAGTAAGCTTTCAGCTGCAGCAAAACCTTTCAATCCAGGAATGTTGTCTATGTCTCACCATTTAAATTCAGGTTCCTTCACCAGTATGTATGACACAGATGTTAGTCAAGGCATGCATGTGGAGCCTGTGCTCCCCCCTGCTGTTGCTAGGGTCCCCTGTGGACCTAGATCACCTCTATATTATAGAACCAACTATACTTTCCGCATGAAACATGGTTTTAGCAAAAGCCAAACACCTATCAGAGAAAGAAGCGGATTTGGATCTCCAAGAATAATGAATCCACATGCACCTGAGTTTGTTCCTAGAAGTGCTTCTCAGATAGAAGCCAATGATTCCAATTCAAATGCTTCCGATGAGCATAACTCTTTATCTGAGGTAGGAATGGCAGAAAAAAACAAGGTAGATGGAAATTTGGCTGAAATCAAGACAAGTTCCACTAAAAACAGTATTTCTGAAGCTGAGAAGTCCGAGATAGCAAGGCAGATATTGCTCAGTTTTTTAGTAAAATCTGTCAAGGAAAATATTGATTCTGTGGATGAATCCAACAACAGTGAAGAAAAAGTTAGGAAGCTGGGAAATTGTGATGATGAAATAGCTAAAGACAGTGCTGTCATAAACATTATGTATGGAAATGAAGAAAAGAATAAGGCAGTGCCTCATTCCAGTGATAGTGATGAGCAAGAGACATTAGGTGTTAGTGAAAAAAAGAATGGTGATGAAGGGTTCATAGTTGTCTCAAAGAGGAGGAAAAACAGGCAGAAGATCACAAATGGAGTCACAGAATTGTACAACCAACAGTCCATTTGTGCTTCAGTTCGTTAA 5112 0.4169 MPPRSGKGKSNKAKAEKKKKEEKAAAPSLVDITVVTPYDTRILLKGISTDKILDVRKLLAVKVETCHFTNYSLSHEAKGHKLNDRVEIVTLKPCLLRMVEEDYTEEAQASAHVRRVLDIVACTTRFGRPKRSLSSPDSRPKKNGKAQHQNKTSLSPPETPNAESRVGLPSSEAPLSAISDNVGMKAIHPTPKLSDFYEFFSLSHISPPILQLKRCEVKDEDVRRKGDYFQLQVKICNGKVIEVVASEKGFYTVGKQSLHSHTLVDLLQQLSRAFANAYESLMKAFLERNKFGNLPYGFRANTWLVPPSVAESPSSFPALPAEDENWGGNGGGGGRNGEFDLRPWATDFAILASLPCKTEEERLVRDRKAFLLHNQFVDTSIFKAVAAIQLVMESNSNMKSELNSSPSSVLHEDHVGDLSIIVKRDIQDGNKKHDSIPDESIVHKEDVQKNLIKGLAADESVIVHDTSSLAVVVVHHCGYTATVKVVGNVNMRKLKVRDIEINDQPDGGANALNTNSLRLLLHKSGSDSLEGNISSLSNSDDLDATKSLVRKVVQEDIEKIKEEPSVSKRSIRWELGSCWMQHLQKQEISSDNSSKNKEDGNDAEQAVKGLGKQFKFLKKREKKSNNVDGADSREQNDSRPGNVNDDDDKVEPNSGDLSNSNDLEKLLSEEAFLRLKESGTGLHTKSVDELISMADKFYDEVALPKLAMDFGSLELSPVDGRTLTDFMHLRGLKMRSLGQVVKLAENLPHIQSLCIHEMITRAFKHQLKAVIASVDNVADLSAAIASTLNFLLGGCRTEDTDQSLNDDHNLRIQWLRMFLSQRFGWTLNDEFQHLRKLSILRGLCHKVGLEIFPRDYDMESSKPFEKNDIISLVPVCKHVGCSSIDGRNLLESSKIALDKGKLEDAVNYGTKALAKMMVVCGPYHRNTASAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLSVFYYRLQHIELALKYVNRALFLLHFTCGLSHPNTAATYINVAMMEEGMGNVHVALRYLHEALKCNKRLLGADHIQTAASYHAIAIALSLMDAFSLSVQHEQTTLKILQAKLGSEDLRTQDAAAWLEYFESKAIEQQEAAKNGTPKPDASIASKGHLSVSDLLDFISPDPKRNDAQRKQRRAKLLPTSDNSQEHEDAVVEESIVFYDSRDAPSMVEGNIEETNDTRRDSQVPKENGDFTSYRPVTSEVVNEASSDEGWQEANSKGRSGNAANRKFGHKKRPLLSKLSINGSNNYIYRESSSRNEITSQPQRGVPISSPSRQPKARIIALNEDSVNYSTKASVSKISSPASLSSLASKSISYKEVALAPPGTVLKPLLEKAEMDKVNAEDEICSSPSVTSINEGTCQSSIVNAVSQNGETEETQEIEPQQENSALEVEKVSLASSDQEKPTETNGSKLSAAAKPFNPGMLSMSHHLNSGSFTSMYDTDVSQGMHVEPVLPPAVARVPCGPRSPLYYRTNYTFRMKHGFSKSQTPIRERSGFGSPRIMNPHAPEFVPRSASQIEANDSNSNASDEHNSLSEVGMAEKNKVDGNLAEIKTSSTKNSISEAEKSEIARQILLSFLVKSVKENIDSVDESNNSEEKVRKLGNCDDEIAKDSAVINIMYGNEEKNKAVPHSSDSDEQETLGVSEKKNGDEGFIVVSKRRKNRQKITNGVTELYNQQSICASVR 1703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00110 1703 MobiDBLite consensus disorder prediction 1646 1665 - -
Phco1g00110 1703 MobiDBLite consensus disorder prediction 620 661 - -
Phco1g00110 1703 MobiDBLite consensus disorder prediction 1224 1245 - -
Phco1g00110 1703 SMART tpr_5 1012 1045 IPR019734 GO:0005515
Phco1g00110 1703 SMART tpr_5 970 1003 IPR019734 GO:0005515
Phco1g00110 1703 SMART tpr_5 928 961 IPR019734 GO:0005515
Phco1g00110 1703 Pfam Translation initiation factor eIF3 subunit 135 715 857 IPR033646 -
Phco1g00110 1703 MobiDBLite consensus disorder prediction 1535 1552 - -
Phco1g00110 1703 MobiDBLite consensus disorder prediction 1644 1665 - -
Phco1g00110 1703 MobiDBLite consensus disorder prediction 1143 1173 - -
Phco1g00110 1703 MobiDBLite consensus disorder prediction 147 166 - -
Phco1g00110 1703 MobiDBLite consensus disorder prediction 1 23 - -
Phco1g00110 1703 MobiDBLite consensus disorder prediction 620 653 - -
Phco1g00110 1703 MobiDBLite consensus disorder prediction 1531 1559 - -
Phco1g00110 1703 SUPERFAMILY TPR-like 894 1047 IPR011990 GO:0005515
Phco1g00110 1703 MobiDBLite consensus disorder prediction 1275 1298 - -
Phco1g00110 1703 MobiDBLite consensus disorder prediction 1275 1293 - -
Phco1g00110 1703 MobiDBLite consensus disorder prediction 128 171 - -
Phco1g00110 1703 Gene3D Tetratricopeptide repeat domain 887 1132 IPR011990 GO:0005515
Phco1g00110 1703 CDD CLU-central 717 858 IPR033646 -
Phco1g00110 1703 SUPERFAMILY Hypothetical protein c14orf129, hspc210 224 291 IPR023231 -
Phco1g00110 1703 ProSiteProfiles TPR repeat profile. 928 961 IPR019734 GO:0005515
Phco1g00110 1703 MobiDBLite consensus disorder prediction 1224 1253 - -
Phco1g00110 1703 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 883 1133 - -
Phco1g00110 1703 ProSiteProfiles Clueless (Clu) domain profile. 322 594 IPR025697 -
Phco1g00110 1703 Pfam Mitochondrial function, CLU-N-term 49 120 IPR028275 -
Phco1g00110 1703 Pfam Tetratricopeptide repeat 927 997 - -
Phco1g00110 1703 Pfam Tetratricopeptide repeat 1011 1085 - -
Phco1g00110 1703 MobiDBLite consensus disorder prediction 1139 1173 - -
Phco1g00110 1703 MobiDBLite consensus disorder prediction 1414 1434 - -
Phco1g00110 1703 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 7 1421 IPR027523 GO:0006996
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00110 Phco-Chr1 815718 826240 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00110 1 815718 826240 Phco1g00110 1 815718 826240 ECH