Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00105 ATGGGGGGAGCATGTTCTAGGAAGCGAGAGCAGGACAATGAAGATTGTCTTATCAGAGGACTATCACGAAGATATTGCAAATGTGGGAGTTTGAAATGGTGGACATCCTCTTTTTCTTATCCATCTGTTGATTTTCACTTACAAAAAGGAGAATGTCCACCACTGTTGGACTTGTGCATACAGAAAATAAATAAGGACATTGATAAATATAACTCATTTTCTATGCTGCCACGGGATATAAGTCAGTTAATTTTTAATAATTTGGTTTACTCCAGACGTCTAACCACTGCTTCCTTAGAAGCTTTTCGAGATTGTGCTCTACAGGATCTTTACTTAGGAGAATATGATGGTGTTAATGATGATTGGATGGGTGTCATCTCATCCCAGGGTTCATCTTTACTTTCTGTAGATCTTTCTGGGTCTGACGTCACTGATTTTGGGCTGACATATATTAAGGATTGTGAAAGTCTAACTTCTTTGAATCTAAATTACTGTGATCAAATTTCAGACCGTGGACTAGAGTGTATCAGTGGCCTGTCAAACTTGACAAGTTTGAGTTTTAGACGAAATGATTCAATTTCTGCTAAAGGAATGAGTGCCTTTTCTGGTCTGGTTAACTTGGTCAAGTTGGATTTGGAGAGATGTCCTGGGATTCACGAAGGCCTTGTTCATCTTCGAGGTTTGACCAAGTTGGAATCTCTCAATTTAAAGTGGTGTAATTGCATAACAGATTATGATATGAAACCCCTTTCAGAGCTTGCTAGCCTGAAAAGTCTAGAGATTTCATCCAGTAAAGTCACTGATTTTGGCATCAGTTTCCTGAAAGGGTTACAGAAGCTTGCCCTGTTAAATTTGGAAGGGTGCCTTGTAACAGCTGCATGCTTGGATTCTCTTGCAGAGCTTCCTGCACTGTCAAACTTGAATCTTAATAGATGCAATCTCTCTGACAATGGGTGCAAAAAATTTTCACGACTGGAAAATTTGAAAGTATTAAACTTGGGATTTAATGTTATAACAGATACATGTTTAATTCACTTGAAAGGATTGACAAAGTTGGAGAGCTTGAACCTTGATTCATGTAAGATTGGAGATGAAGGGTTGGTCAATTTGGCTGGCCATAAGCGATTGAACTGCTTGGAATTGTCTGATACAGAAGTTGGAAGCAATGGGCTACACCATTTATCAGGATTGTCTAATCTGCAGAAAATAAATCTTTCTTTTACCATGGTTAGTGATGGTGGTTTAAGAAAATTGTGTGGACTCTCATCTCTGAAGTCACTTAATTTGGATGCTTACCAAATTTCTGATATTGGGCTGTCAAACCTTACAAGTTTGACTGGCCTCACTGAACTGGATTTGTTTGGTGCACGAATCACAGATTTTGGTACAAACTATTTGAAAAAGTTTAAGAACCTGAGGTCTTTGGAAATATGTGGTGGAGCTTTGACTGATGCTGGTGTAAAAAATATCAAAGAGCTTTCTTCTCTGGTCTGCTTAAATTTATCACAAAACAGCAATCTTACAGACAAAACTCTAGAGTTAATTTCTGGGCTTACTGGGTTGGTTTCTTTGAATGTTTCAAATTCCCGTATCACCAATGCTGGTCTGCAGCATTTGAAAGCACTCAAGGACTTGAGATCTCTGACATTGGAGTCCTGTAAGGTGACTGCAAATGACATGAAGAAATTGAAATCAATATACCTCCCGAATCTGGTAAGCTTTCGGCCAGGTTAG 1734 0.387 MGGACSRKREQDNEDCLIRGLSRRYCKCGSLKWWTSSFSYPSVDFHLQKGECPPLLDLCIQKINKDIDKYNSFSMLPRDISQLIFNNLVYSRRLTTASLEAFRDCALQDLYLGEYDGVNDDWMGVISSQGSSLLSVDLSGSDVTDFGLTYIKDCESLTSLNLNYCDQISDRGLECISGLSNLTSLSFRRNDSISAKGMSAFSGLVNLVKLDLERCPGIHEGLVHLRGLTKLESLNLKWCNCITDYDMKPLSELASLKSLEISSSKVTDFGISFLKGLQKLALLNLEGCLVTAACLDSLAELPALSNLNLNRCNLSDNGCKKFSRLENLKVLNLGFNVITDTCLIHLKGLTKLESLNLDSCKIGDEGLVNLAGHKRLNCLELSDTEVGSNGLHHLSGLSNLQKINLSFTMVSDGGLRKLCGLSSLKSLNLDAYQISDIGLSNLTSLTGLTELDLFGARITDFGTNYLKKFKNLRSLEICGGALTDAGVKNIKELSSLVCLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRITNAGLQHLKALKDLRSLTLESCKVTANDMKKLKSIYLPNLVSFRPG 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00105 577 SMART LRR_CC_2 349 373 IPR006553 -
Phco1g00105 577 SMART LRR_CC_2 228 253 IPR006553 -
Phco1g00105 577 SMART LRR_CC_2 421 445 IPR006553 -
Phco1g00105 577 SMART LRR_CC_2 493 518 IPR006553 -
Phco1g00105 577 SMART LRR_CC_2 154 179 IPR006553 -
Phco1g00105 577 SMART LRR_CC_2 519 542 IPR006553 -
Phco1g00105 577 SMART LRR_CC_2 301 325 IPR006553 -
Phco1g00105 577 SUPERFAMILY RNI-like 272 566 - -
Phco1g00105 577 FunFam Predicted protein 118 219 - -
Phco1g00105 577 Gene3D Ribonuclease Inhibitor 220 301 IPR032675 -
Phco1g00105 577 Gene3D Ribonuclease Inhibitor 480 572 IPR032675 -
Phco1g00105 577 Gene3D Ribonuclease Inhibitor 123 219 IPR032675 -
Phco1g00105 577 Gene3D Ribonuclease Inhibitor 406 479 IPR032675 -
Phco1g00105 577 Gene3D Ribonuclease Inhibitor 334 405 IPR032675 -
Phco1g00105 577 SUPERFAMILY RNI-like 115 361 - -
Phco1g00105 577 FunFam Leucine-rich repeat family protein 220 298 - -
Phco1g00105 577 Pfam Leucine rich repeat 156 215 IPR001611 GO:0005515
Phco1g00105 577 Pfam Leucine rich repeat 471 531 IPR001611 GO:0005515
Phco1g00105 577 Pfam Leucine rich repeat 302 362 IPR001611 GO:0005515
Phco1g00105 577 PANTHER UNCHARACTERIZED 48 244 - -
Phco1g00105 577 FunFam Leucine-rich repeat family protein 474 573 - -
Phco1g00105 577 Pfam Leucine Rich repeat 229 250 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00105 Phco-Chr1 780613 790407 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00105 1 780613 790407 Phco1g00105 1 780613 790407 ECH