Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00104 ATGTCGTCTCTTAGTAGGGAATTGGTGTTCTTGATCTTGCAGTTTCTCGATGAGGAAAAGTTCAAAGAGACTGTACACAAGCTTGAGCAGGAATCAGGGTTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCATAACGGGAATTGGGACGAGGTGGAGAAATACCTCTCCGGTTTCACCAAGGTGGATGATAATAGGTATTCTATGAAGATATTTTTTGAGATAAGGAAGCAGAAGTATCTGGAGGCTTTAGATAAGCATGACCGGTCTAAGGCAGTAGAAATATTAGTGAAGGATTTGAAAGTGTTCGCTACATTTAATGAAGAATTGTTCAAGGAAATCACACAGCTTCTGACATTGGAAAACTTTAGGGAGAATGAACAATTGTCTAAGTACGGTGATACAAAGTCTGCACGAGCAATCATGTTGGTTGAGCTCAAAAAGCTCATCGAAGCAAATCCTTTATTTCGTGACAAATTGCAATTTCCCAACCTTAAAAACTCAAGGTTGCGGACTTTAATCAATCAAAGCCTAAATTGGCAGCATCAACTTTGCAAGAATCCACGGCCAAATCCTGATATAAAAACACTTTTCGTGGATCATTCATGTGCACAACCAAATGGTGCACGAGCTCCTTCACCTGCTAATAATCCGCTACTAGGTGCCTTACCAAAGGCTGGAGGATTTCCTCCACTTGGTGCACATGGGCCTTTTCAACCTACTCCAGCGCCAGTGCCAACACCCCTGGCTGGTTGGATGTCGAATCCTACCACTGTAGCACATGCTGCGGTTTCTGGAGGTGGAGCTATAGGTCTTGGTGCTCCATCTATGCCTGCTGCTTTGAAGCATCCTAGGACCCCCCCAACTAATCCTTCTGTTGACTATCCATCTGGAGACTCAGAGCATGTTGCTAAGAGATCAAGGCCAATTGGAATTTCGGATGAGGTGAATCTACCTGTCAATGTGTTATCAGCAACATTCCCAGGTCATGGTCAACATAGTCAAGCATTTAACGCACCTGATGACATACCTAAGGCTGTTGTGCGAACTCTTAATCAGGGTTCATCTCCTATGAGCATGGACTTTCATCCAGTTCAACAATCTTTACTTCTTGTTGGTACAAATGTGGGGGACATTGCTTTGTGGGAGGTGGGTTCTAGGGAGCGCTTGGTCTCAAGGAACTTCAAAGTTTGGGATCTTAGTGCATGTTCAATGCCATTTCAGGCTGCTCTTGTTAAAGATCCGGGTGTTTCTGTTAACCGCGTGATTTGGAGTCCTGACGGTGCTTTATTTGGAGTTGCTTACTCAAGGCACATTGTTCAGATATACTCTTACAATGGTGGGGATGAAATACGACATCACTTGGAGATTGATGCTCATGTTGGTGGAGTAAATGATCTAGCATTTTCCCACCCAAATAAGCAACTATGCGTGATAACTTGTGGTGATGATAAGACCATTAGGGTATGGGATGCTGCTTCGGGTGCAAAGCAGTATACATTTGAAGGTCACGAGGCTCCTGTTTATTCTGTCTGCCCGCATTATAAAGAAAACATTCAGTTCATCTTTTCAACAGCATTAGATGGAAAAATAAAAGCATGGCTATATGACAATTTGGGATCTCGTGTTGATTATGAAGCTCCTGGTCGTTGGTGCACAACCATGGCTTATAGTGCTGATGGTACAAGGCTCTTTTCATGCGGGACAAGCAAAGATGGAGAATCCTCTATTGTTGAGTGGAATGAGAGTGAAGGGGCTGTGAAAAGGACTTATCAAGGATTCCGTAAGCGATCTTTGGGTGTTGTGCAATTTGATACTACCAAAAATCGATTTTTGGCAGCTGGTGATGATTTCTCCATCAAATTCTGGGATATGGATAATGTTCAGCTTTTGACAACTGTTGATGCTGATGGGGGTCTCCCTGCAAGCCCACGTATTCGTTTCAACAAGGATGGAACACTTTTAGCTGTCTCTGCAAATGAGAATGGAATCAAAATTTTAGCCAATGGGGATGGTATTCGTTTGTTGCGCACACTAGAGAATTCTTTATATGATGCTTCAAGGGCATCAGAAGCCTTGACAAAGCCTACAATTAATCCAATTTCTGCCGCCGCTGCTGCCGCTGCAACCAGTGCTGCACTGGCAGAGAGGGCTTCATCTGTAGTAGCTATTGCTGGAATGAATGGGGATACCCGAAACATGGGTGATGTTAAACCCAGAATAAGCGAAGAATCAAATGACAAGTCAAAGGTATGGAAGCTCACTGAAATAAATGAACAATCTCAATGTAGATCCTTGAAGCTACCGGAGAATGTAAGAGCAACTAAGATATCAAGGTTGATATATACAAATTCAGGTAATGCTATTCTGGCGTTAGCATCAAATGCCATTCACCTGCTGTGGAAATGGCAGCGAAATGAGCGTAACTCATCTGGCAAGGCCACTGCTACCTTGCAACCGCAGTTGTGGCAACCATCTAGTGGCATCCTGATGACAAATGACATTGCTGATAGCAATCCTGAAGATGCTGTACCCTGCTTTGCATTGTCCAAAAATGACTCATACGTAATGTCGGCATCAGGAGGGAAGATATCTCTGTTCAATATGATGACTTTTAAGACCATGACAACATTCATGCCTCCACCACCTGCGGCAACCTTTCTTGCTTTCCATCCTCAGGATAACAATATTATTGCTATAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGGTTAAAAGTAAACTCAAAGGCCATACTAAAAGAATTACTGGTCTTGCTTTCTCTCATGTATTGAATGTATTAGTTTCATCTGGAGCTGATGCTCAGATTTGTGTTTGGAACACTGATGGATGGGAAAAGCAGAAGTCTAGATTCTTGCAGCTTCCTCCTGGGAGGACACCACCGGCACAGTCAGATACCCGTGTACAGTTTCATCAAGATCAAATACAGTTCCTGGTTGTACATGAAACTCAGCTTGCCATTTATGAAGCAACAAAACTAGAAGGTCTAAAGCAGTGGTGCCCACGAGATTCATCTGCACCAATATCGCATGCAACATTCTCCTGTGATAGCCAGCTTATATATGCCAGCTTTTTAGACGCAACAATCTGTGTATTTAGTGCTTCAAATCTCAGATTACGTTGTCGTATCAATCCTTCTGCATATCTTCCTGCAAGTGTCAGTTCCAACATACAACCACTTGTAATTGCGGCTCACCCACAAGAGCCAAATCAGTTTGCTGTAGGACTGTCGGATGGTGGAGTTCATGTTTTTGAACCCCTTGAGTCTGAAGGCAAGTGGGGGGTGCCTCCTCCGATTGAGAATGGGTCAGCGAGCAATGTGGTAGCTACTTCTGTTGGACCTTCTTCAGATCAAGCTCAAAGATGA 3408 0.4322 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCAQPNGARAPSPANNPLLGALPKAGGFPPLGAHGPFQPTPAPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSMPAALKHPRTPPTNPSVDYPSGDSEHVAKRSRPIGISDEVNLPVNVLSATFPGHGQHSQAFNAPDDIPKAVVRTLNQGSSPMSMDFHPVQQSLLLVGTNVGDIALWEVGSRERLVSRNFKVWDLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYNGGDEIRHHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIRVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLLAVSANENGIKILANGDGIRLLRTLENSLYDASRASEALTKPTINPISAAAAAAATSAALAERASSVVAIAGMNGDTRNMGDVKPRISEESNDKSKVWKLTEINEQSQCRSLKLPENVRATKISRLIYTNSGNAILALASNAIHLLWKWQRNERNSSGKATATLQPQLWQPSSGILMTNDIADSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPPGRTPPAQSDTRVQFHQDQIQFLVVHETQLAIYEATKLEGLKQWCPRDSSAPISHATFSCDSQLIYASFLDATICVFSASNLRLRCRINPSAYLPASVSSNIQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIENGSASNVVATSVGPSSDQAQR 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00104 1135 Gene3D - 549 736 IPR015943 GO:0005515
Phco1g00104 1135 ProSiteProfiles Trp-Asp (WD) repeats profile. 922 963 IPR001680 GO:0005515
Phco1g00104 1135 SMART Lish 4 36 IPR006594 GO:0005515
Phco1g00104 1135 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Phco1g00104 1135 ProSiteProfiles Trp-Asp (WD) repeats profile. 458 501 IPR001680 GO:0005515
Phco1g00104 1135 ProSitePatterns Trp-Asp (WD) repeats signature. 479 493 IPR019775 -
Phco1g00104 1135 Pfam WD domain, G-beta repeat 454 492 IPR001680 GO:0005515
Phco1g00104 1135 Pfam WD domain, G-beta repeat 921 954 IPR001680 GO:0005515
Phco1g00104 1135 MobiDBLite consensus disorder prediction 285 304 - -
Phco1g00104 1135 Gene3D - 772 1130 IPR015943 GO:0005515
Phco1g00104 1135 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Phco1g00104 1135 ProSiteProfiles Trp-Asp (WD) repeats profile. 603 634 IPR001680 GO:0005515
Phco1g00104 1135 SUPERFAMILY WD40 repeat-like 984 1098 IPR036322 GO:0005515
Phco1g00104 1135 MobiDBLite consensus disorder prediction 1106 1135 - -
Phco1g00104 1135 SMART ctlh 34 92 IPR006595 -
Phco1g00104 1135 FunFam Topless-related protein 1 324 543 - -
Phco1g00104 1135 SMART WD40_4 585 625 IPR001680 GO:0005515
Phco1g00104 1135 SMART WD40_4 1056 1099 IPR001680 GO:0005515
Phco1g00104 1135 SMART WD40_4 1008 1047 IPR001680 GO:0005515
Phco1g00104 1135 SMART WD40_4 495 536 IPR001680 GO:0005515
Phco1g00104 1135 SMART WD40_4 406 445 IPR001680 GO:0005515
Phco1g00104 1135 SMART WD40_4 915 954 IPR001680 GO:0005515
Phco1g00104 1135 SMART WD40_4 872 912 IPR001680 GO:0005515
Phco1g00104 1135 SMART WD40_4 832 869 IPR001680 GO:0005515
Phco1g00104 1135 SMART WD40_4 345 384 IPR001680 GO:0005515
Phco1g00104 1135 SMART WD40_4 539 582 IPR001680 GO:0005515
Phco1g00104 1135 SMART WD40_4 451 492 IPR001680 GO:0005515
Phco1g00104 1135 FunFam Topless-related protein 3 741 977 - -
Phco1g00104 1135 Gene3D - 300 545 IPR015943 GO:0005515
Phco1g00104 1135 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 922 954 - -
Phco1g00104 1135 MobiDBLite consensus disorder prediction 1117 1135 - -
Phco1g00104 1135 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1117 IPR027728 GO:0006355
Phco1g00104 1135 SUPERFAMILY Putative isomerase YbhE 348 453 - -
Phco1g00104 1135 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 423 959 IPR011047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00104 Phco-Chr1 769715 776567 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00104 1 769715 776567 Phco1g00104 1 769715 776567 ECH