Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00087 ATGACGATGAACGACGAAATCTACTTACACGCGCTCACCACCACCACCGCTAACTTTTTGCTTGCGAAATCCGAAACAGCGTCGTCTCAGGCGCTGGACTCATCGCAGAAGCTACGCTACGAAACGGCGCTCGAAGGGATAGCCGCGGTTGTTGGAGAGCACGTGCTCTTCGGAACGACGTCGTCGTTGCATGTTCCGGACACGCCGAAGAGAACGGCGGGCGTGTCGGTGAACAAGAGTTACCGAGGAGTGCGGAAGAGACCGTGGGGGAGGTGGTCGGCGGAGATACGCGACCGGATCGGGCGGTGCCGCCACTGGCTGGGGACCTTCGACACGGCGGAGGAAGCGGCGCGTGCGTACGACGCGGCGGCGAGGCGGCTTAGAGGCGCGAAGGCGAGGACCAACTTCAAGATACCCTCTGTGCTGCCACTTTCTCCGTCTTCGGAAGGTGTTCATGGTGGTGCCGTGAAGCCGAAAGCCGCGCGCAATAACGCGAGGAAGTGTTCCTCCGTGGAACAGTTGTTCAGTGGCGTGCCCCAAGTTCGAAGAACTGATGGTGGTGGCGAGAATGGGAACGTGGAGGTGGATTTGAAGCTGGGTGTGAACTTTGGTGTTGCGAACAGTAGAACAGTTATTTAG 639 0.59 MTMNDEIYLHALTTTTANFLLAKSETASSQALDSSQKLRYETALEGIAAVVGEHVLFGTTSSLHVPDTPKRTAGVSVNKSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGAKARTNFKIPSVLPLSPSSEGVHGGAVKPKAARNNARKCSSVEQLFSGVPQVRRTDGGGENGNVEVDLKLGVNFGVANSRTVI 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00087 212 Pfam AP2 domain 80 129 IPR001471 GO:0003700|GO:0006355
Phco1g00087 212 SUPERFAMILY DNA-binding domain 80 137 IPR016177 GO:0003677
Phco1g00087 212 Coils Coil 113 133 - -
Phco1g00087 212 SMART rav1_2 80 143 IPR001471 GO:0003700|GO:0006355
Phco1g00087 212 FunFam Ethylene-responsive transcription factor 2 79 138 - -
Phco1g00087 212 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700|GO:0006355
Phco1g00087 212 PRINTS Ethylene responsive element binding protein signature 103 119 IPR001471 GO:0003700|GO:0006355
Phco1g00087 212 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 42 161 - -
Phco1g00087 212 CDD AP2 79 138 IPR001471 GO:0003700|GO:0006355
Phco1g00087 212 Gene3D AP2/ERF domain 79 138 IPR036955 GO:0003700|GO:0006355
Phco1g00087 212 ProSiteProfiles AP2/ERF domain profile. 80 137 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00087 Phco-Chr1 630397 631035 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco1g00087 AP2 2.3e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00087 1 630397 631035 Phco1g00087 1 630397 631035 ECH