Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00025 ATGTCTTCCTCCAACACTAACTCTCACTCTAAACCTCAAACTCAGGAAGCTAACATGGCATTGCAAACCCATTCTCCTTCCCACTCGCATAACAACAACAACAACAACAAAGGGGTCTTTGGAGATGTCTACACCATCATCAAAGACATGCACGCCGATCATCAAAACTCTACCTTTGATTTCCGCCTTCCCCCGCTTACAAATTTTCTGGGCTCTCGAGAGGCCCGCGAGTTTTTCAGCGGTGCCCTTGCAGGGGCAATGACAAAGGCTATACTTGCTCCTCTGGAGACCATCAGGACAAGAATGGTTGTTGGTGTTGGATCGAAAAATATTGCTGGTAGTTTCATAGAGGTTATAGAGCAGCAGGGATGGCAAGGATTGTGGGCTGGAAACATGATCAATATGCTTCGTATAGTTCCAACACAGGCCATTGAGCTAGCCACATTTGAGTGCGTCAAACGGACTATGTCATCCGTGCAAAACAAATGGGAGCACACTGACTACCCCAAGTTGCAGATAGGTTGCATCAATTTCAACCTGCCCTTACATTGGATTTCGCCAGTTGCTGTTGCTGGTGCTGCAGCAGGGATTGCTAGCACAGTTGTATGCCATCCCCTCGAAGTTTTGAAGGACCGGCTAACTGTTAGTCCTGAAATCTACCCTACTTTAGGTGTTGCGATTAGAAATATTTATAAAGATGGCGGTGTTGGCGCTTTTTATGCTGGTATCTCACCAACACTGGTTGGCATGCTTCCATATAGTACATGTTATTATTTCTTGTATGATACCATGAAGGATTCTTACTGCCAGACCAAAAAGAAGAAATCTCTAAATCGTCCAGAGATGCTTTTGATTGGAGCTCTAGCAGGTTTTACTGCCAGTACAATTAGCTTCCCATTGGAGGTGGCTAGGAAGCGGCTGATGGTGGGGGCTTTGCAAGGTAAGTGCCCACCAAACATGGGAGCAGCACTTGGGGAAGTAATTAGAGAAGAAGGTCTGAAGGGTCTCTACAGAGGATGGGGTGCAAGTTGTTTAAAGGTCATGCCATCCTCTGGTATCACCTGGATGTTTTATGAAGCGTGGAAAGACATATTGCTTGTCCAGAATGGTAACCCATTTTAG 1122 0.4581 MSSSNTNSHSKPQTQEANMALQTHSPSHSHNNNNNNKGVFGDVYTIIKDMHADHQNSTFDFRLPPLTNFLGSREAREFFSGALAGAMTKAILAPLETIRTRMVVGVGSKNIAGSFIEVIEQQGWQGLWAGNMINMLRIVPTQAIELATFECVKRTMSSVQNKWEHTDYPKLQIGCINFNLPLHWISPVAVAGAAAGIASTVVCHPLEVLKDRLTVSPEIYPTLGVAIRNIYKDGGVGAFYAGISPTLVGMLPYSTCYYFLYDTMKDSYCQTKKKKSLNRPEMLLIGALAGFTASTISFPLEVARKRLMVGALQGKCPPNMGAALGEVIREEGLKGLYRGWGASCLKVMPSSGITWMFYEAWKDILLVQNGNPF 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00025 373 PANTHER SOLUTE CARRIER FAMILY 25 73 365 - -
Phco1g00025 373 MobiDBLite consensus disorder prediction 1 36 - -
Phco1g00025 373 Gene3D Mitochondrial carrier domain 71 369 IPR023395 -
Phco1g00025 373 ProSiteProfiles Solute carrier (Solcar) repeat profile. 277 364 IPR018108 -
Phco1g00025 373 Pfam Mitochondrial carrier protein 281 366 IPR018108 -
Phco1g00025 373 Pfam Mitochondrial carrier protein 189 268 IPR018108 -
Phco1g00025 373 Pfam Mitochondrial carrier protein 75 157 IPR018108 -
Phco1g00025 373 ProSiteProfiles Solute carrier (Solcar) repeat profile. 183 267 IPR018108 -
Phco1g00025 373 PRINTS Mitochondrial carrier protein signature 286 308 IPR002067 GO:0055085
Phco1g00025 373 PRINTS Mitochondrial carrier protein signature 240 258 IPR002067 GO:0055085
Phco1g00025 373 PRINTS Mitochondrial carrier protein signature 77 90 IPR002067 GO:0055085
Phco1g00025 373 PRINTS Mitochondrial carrier protein signature 90 104 IPR002067 GO:0055085
Phco1g00025 373 PRINTS Mitochondrial carrier protein signature 130 150 IPR002067 GO:0055085
Phco1g00025 373 ProSiteProfiles Solute carrier (Solcar) repeat profile. 72 155 IPR018108 -
Phco1g00025 373 SUPERFAMILY Mitochondrial carrier 76 359 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00025 Phco-Chr1 274180 276693 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00025 1 274180 276693 Phco1g00025 1 274180 276693 ECH