Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00019 ATGTGGAGGCTGAAGGTTGGAGATGGTGGAAAGGATCCATACATATTCAGCACGAACAATTTCGTAGGGAGACAGATATGGGAGTATGATCCTGAAGCAGGTAGCAGCGAGGAACGGGCTGAGGTGGAGGAAGCCAGGAACAATTTCTACCGCAACCGCTTCAAGGTGAAGCCCTGCGGTGATCTCCTTTGGCGGTTTCAGGTTCTGCGGGAGAATAACTTCAAACAAACAATACCTAGCGTGAAGATAGAAGACGGAGAAGAAATAACTTACGAGAAAGTGACTTCCGCTGTTAGAAGAGGCGCTTATCATCTGTCTGCACTGCAGACCAGCGATGGCCATTGGCCTGCACAAATTGCAGGTCCTATGTTTTTTCTTCCTCCTCTGGTATTCTGTATTTATATTACAGGGCATCTTGAATCAGTATTTCCAGAAGAGCATCGCAAAGAAATTCTCCGCTACATATATTATCACCAGAATGAAGATGGAGGATGGGGACTACACATAGAGGGTCATAGCACCATGTTTTGTACTGCACTAAATTATATATGTATGAGGATTCTTGGAGAAGGACCCAATGGAGGTCATGACAATGCTTGTGTTAGAGCAAGAAAGTGGATTCAAGATCATGGTGGTGTAACACATATACCTTCATGGGGGAAAACTTGGCTTTCGATACTTGGTGTATTTGATTGGTGTGGAAGTAACCCAATGCCCCCAGAGTTTTGGATCCTTCCTTCCTTTCTTCCTATGCATCCGGCTAAGATGTGGTGTTACTGTCGATTAGTGTACATGCCTATGTCTTACTTATATGGAAAGAGGTTTGTTGGTCCAATTACACCTCTCATTTTACAATTGAGACAAGAGTTGTTTACTCAACCCTATGAAAAAGTTAATTGGAAGAAAGCACGTCACCAATGTGCAAAGGAAGATCTCTACTATCCTCATCCTTTGATACAAGATTTAATATGGGATAGTTTATACATATTTACTGAGCCACTGCTAACTCGTTGGCCTTTCAACAAGCTGGTTAGAGAAAAAGCTCTTCAAGTAACAATGAAACATATTCATTACGAAGATGAGACCAGTCGATACATTACCATTGGTTGCGTGGAAAAGGTTTTATGCATGCTTGCTTGTTGGGTGGAAGATCCAAATGGAGATGCTTTCAAGAAGCATCTTGCAAGGGTGCCAGATTACCTATGGATGTCTGAAGATGGAATGACCATGCAGAGTTTTGGTAGTCAAGAATGGGATGCTGGTTTTGCTGTTCAAGCTTTGCTTGCTGCTAACCTAGTTGATGAAATTGGTCCCGCACTTCGAAAAGGACATTATTTCATTAAGGAGTCTCAGGTAAGGGATAACCCTTATGGAGACTTTAAGGGTATGCATCGTCATATTTCTAAAGGATCTTGGACATTCTCTGATCAAGACCATGGATGGCAAGTTTCTGATTGCACAGCGGAAGGCTTGAAGTGTTGTCTACTTCTATCAACGTTGCCACCAGAGATTGTGGGAGAAAAGATGGAACCCGAAAGGTTATATGATTCAGTCAATGTCCTGTTGTCGCTTCAGAGTAAAAAGGGTGGTTTATCTGCATGGGAGCCTGCAGGAGCTCAAGAGTGGTTAGAATTACTGAATCCCACGGAGTTTTTTGCGGATATTGTAGTTGAACATGAATACGTTGAGTGCACTGGATCTGCAATTCAAGCTTTAGTTTTGTTCAAGAAGATGTATCCAGGGCATAGGAAGAAAGAGATAGAGAATTTCATTAGCAATGCAGTTAGATTCCTTGAGAATACACAAACTGCTGATGGTTCCTGGTATGGAAATTGGGGAGTTTGTTTCACTTATGGTTCTTGGTTCGCACTTGGCGGTCTAGCAGCTGCTGGCAAGACTTACACCAATTGTGCTGCTATTCGTAAAGCCGTTCAATTTCTACTCACCAGACAGAGGGAGGACGGTGGATGGGCGGAGAGTTATCTTTCAAGCCCAAAAAAGATTTATGTACCGCTAGAAGGAAGTCGATCAAATGTTGTTCAAACAGCATGGGCTCTTATGGGACTCATTCATGCTGGACAGGCAGACAGAGACCCTACTCCTCTTCATCGTGCTGCAAAGTTGCTCATCAATTCTCAGTTGGAAGAGGGTGATTGGCCCCAACAGGAAATCACTGGAGTATTCATGAAAAATTGCATGTTGCATTATCCAATGTATAGAGATATTTATCCAATGTGGGCTCTAGCTGAATATCGTAGACGAGTTTCGTTGCCTTCTGCTGAAGTTGAATGA 2292 0.4293 MWRLKVGDGGKDPYIFSTNNFVGRQIWEYDPEAGSSEERAEVEEARNNFYRNRFKVKPCGDLLWRFQVLRENNFKQTIPSVKIEDGEEITYEKVTSAVRRGAYHLSALQTSDGHWPAQIAGPMFFLPPLVFCIYITGHLESVFPEEHRKEILRYIYYHQNEDGGWGLHIEGHSTMFCTALNYICMRILGEGPNGGHDNACVRARKWIQDHGGVTHIPSWGKTWLSILGVFDWCGSNPMPPEFWILPSFLPMHPAKMWCYCRLVYMPMSYLYGKRFVGPITPLILQLRQELFTQPYEKVNWKKARHQCAKEDLYYPHPLIQDLIWDSLYIFTEPLLTRWPFNKLVREKALQVTMKHIHYEDETSRYITIGCVEKVLCMLACWVEDPNGDAFKKHLARVPDYLWMSEDGMTMQSFGSQEWDAGFAVQALLAANLVDEIGPALRKGHYFIKESQVRDNPYGDFKGMHRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLLSTLPPEIVGEKMEPERLYDSVNVLLSLQSKKGGLSAWEPAGAQEWLELLNPTEFFADIVVEHEYVECTGSAIQALVLFKKMYPGHRKKEIENFISNAVRFLENTQTADGSWYGNWGVCFTYGSWFALGGLAAAGKTYTNCAAIRKAVQFLLTRQREDGGWAESYLSSPKKIYVPLEGSRSNVVQTAWALMGLIHAGQADRDPTPLHRAAKLLINSQLEEGDWPQQEITGVFMKNCMLHYPMYRDIYPMWALAEYRRRVSLPSAEVE 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00019 763 ProSitePatterns Terpene synthases signature. 605 619 IPR002365 GO:0016866
Phco1g00019 763 CDD SQCY_1 98 751 IPR018333 GO:0005811|GO:0016104|GO:0016866
Phco1g00019 763 FunFam Terpene cyclase/mutase family member 389 758 - -
Phco1g00019 763 Gene3D - 491 723 - -
Phco1g00019 763 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 121 410 IPR008930 -
Phco1g00019 763 FunFam Uncharacterized protein 119 349 - -
Phco1g00019 763 Pfam Squalene-hopene cyclase C-terminal domain 418 753 IPR032696 -
Phco1g00019 763 SFLD Prenyltransferase Like 2 84 755 IPR018333 GO:0005811|GO:0016104|GO:0016866
Phco1g00019 763 PANTHER TERPENE CYCLASE/MUTASE FAMILY MEMBER 1 756 IPR018333 GO:0005811|GO:0016104|GO:0016866
Phco1g00019 763 Pfam Squalene-hopene cyclase N-terminal domain 99 403 IPR032697 -
Phco1g00019 763 Gene3D - 119 414 - -
Phco1g00019 763 NCBIfam squalene/oxidosqualene cyclases 97 753 IPR018333 GO:0005811|GO:0016104|GO:0016866
Phco1g00019 763 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 351 755 IPR008930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00019 Phco-Chr1 235041 241337 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00019 1 235041 241337 Phco1g00019 1 235041 241337 ECH