Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00016 ATGGCGGCAATCCAACCACCGCAGGCTCCGGATCGTACAACCGAAGAGATACCAGCCGAACCAGATAACATGAAGGAGCAGGGTACAGTGACTATAGGTCATTCGAGGGAGACCACGAGTCAATCAGGATCTTTAGGTTCGGGTGGAGATGTTCCTCTTTATCCTCCTAACGTGTATGCTCCCCAAGCCCAGGCTTTCTACTATAGAGGTTTTGACAATGGCAACGGTGAATGGGATGAATATTCTTCTTATGTCAATTCTGAAGGATTAGAAATTGGATCTCCTGGTGTCTACAATGAAAATCCATCACTTATTTTCCATTCTGGGTATGGCTTCAACCCACAAATGCCTTATGGACCATATTCCCCAGTTACCACACCTTTGCCTTCTGTAGGTGGAGACACACAGTTATACTCCTCGCAGCAATTTCCATACACTGGGCCACCTTATTATCCTCAGCTGATTCCTCCTAGCTTATCATATCTCAATTCACCTACTCCAGTTTCACAGCCAGAGCTCACCAACCTGGTAGGTATTGACCAACAAGTTGATAACATGTTTTTTGGACCAAGAGCAGGCTATCCATCAGTGGGATCTTTTGGTAGAGGCAGCTTTCCTGTAGCACCTGGTTCCTTTGGCTTTCATGAATCCCAACAAGGATTTGAGGGATCAAGATCTGGTGGTATATGGTCAGATTGCTCAAAACCCTCAGAAAGACAAAGATCTTTGATGCCTCTATCGCCATCTGTTTCTCCACGGCCAATGGGTTCACTTGGGTCATTTGGGCCAAGTGTTGGAATGGCCTCTCATCAACAACAAACATTGTATGGGTTTGGATCTGGTTCAAACTCTTATGGTAGAGGCTACCTGCCTAACCAGGGCTCCAGCTTTGGAGATACTTCTATTTCCAATCTTAATGACAGGAGTTGTGCTTCTCTTGAAAATAGCAGGAGGCAAGGGCGGCCATCTGCATCTCTTTGCAATTGTAATGGTACTCTTGATATCCTTAGTGAGCAGAACCGAGGACCAAGGGCCTCAAAGCTGAAAAATCAAATTTTGGCTGAAAAAAATTCTGTGGATAATAGTAAAAATAGTGCATCTATTGCCAAGTTTCAAAATGAATCACTCAATCGGTCAGATTTTGCCATTGATTACAAGGATGCCAAATTTTTTGTCATCAAATCTTACAGTGAAGATAATGTTCACAAGAGCATTAAATATGGTGTCTGGGCTAGTACACCAAACGGAAACAGGAAGTTAGATGCTGCATATCGCCAAGCAATGGAGAAGCAAGAGGCCTGCCCTATATTTCTCTTTTTCTCGGTAAATGCTAGTGCTCAGTTCTGTGGGGTAGCTGAAATGGTTGGACCTGTCAATTTTGACAAGAGTGTGGACTTCTGGCAACAAGATAAGTGGAGTGGGCAGTTTCCCGTGAAGTGGCACATAATTAAAGACGTTCCAAACAGTCAGTTTCGTCACATTGTTCTTGAAAATAATGATAACAAGCCTGTGACTAACAGTCGAGATACTCAGGAGGTGAAGTTGCCACAGGGTATTGAAATGTTGACCATTTTCAAAAACTATGAAACTGATGTTTCCATCCTGGATGATTTTGATTTCTACGAAGACCGGCAGAAGGCTATGCAAGAACGGAAGGCAAGGCAGCAAAGCAGCATGATGACAACTGGATTAGTTGGAGAAAATGAACATAGGAGTTCTGCTAACACTACTGGTGATTTTATGAAGCAGATGTCAAAGAGCTTTGCTCTAGTTGTCCGCTTAGATGAGAATAACAACGAAGTTGCTGCGGACAGAGATAGTTTAGTCTCTCATGGCCCCATTGGAAACGTAGTTAAATCTGATGATGGTCAGTCTGTGACGGCCTCTTCAACTCAAACCAGTTAG 1905 0.4362 MAAIQPPQAPDRTTEEIPAEPDNMKEQGTVTIGHSRETTSQSGSLGSGGDVPLYPPNVYAPQAQAFYYRGFDNGNGEWDEYSSYVNSEGLEIGSPGVYNENPSLIFHSGYGFNPQMPYGPYSPVTTPLPSVGGDTQLYSSQQFPYTGPPYYPQLIPPSLSYLNSPTPVSQPELTNLVGIDQQVDNMFFGPRAGYPSVGSFGRGSFPVAPGSFGFHESQQGFEGSRSGGIWSDCSKPSERQRSLMPLSPSVSPRPMGSLGSFGPSVGMASHQQQTLYGFGSGSNSYGRGYLPNQGSSFGDTSISNLNDRSCASLENSRRQGRPSASLCNCNGTLDILSEQNRGPRASKLKNQILAEKNSVDNSKNSASIAKFQNESLNRSDFAIDYKDAKFFVIKSYSEDNVHKSIKYGVWASTPNGNRKLDAAYRQAMEKQEACPIFLFFSVNASAQFCGVAEMVGPVNFDKSVDFWQQDKWSGQFPVKWHIIKDVPNSQFRHIVLENNDNKPVTNSRDTQEVKLPQGIEMLTIFKNYETDVSILDDFDFYEDRQKAMQERKARQQSSMMTTGLVGENEHRSSANTTGDFMKQMSKSFALVVRLDENNNEVAADRDSLVSHGPIGNVVKSDDGQSVTASSTQTS 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00016 634 Pfam YT521-B-like domain 388 526 IPR007275 GO:0003723
Phco1g00016 634 CDD YTH 389 525 IPR007275 GO:0003723
Phco1g00016 634 Gene3D ph1033 like domains 364 540 - -
Phco1g00016 634 ProSiteProfiles YTH domain profile. 388 525 IPR007275 GO:0003723
Phco1g00016 634 MobiDBLite consensus disorder prediction 219 247 - -
Phco1g00016 634 MobiDBLite consensus disorder prediction 620 634 - -
Phco1g00016 634 MobiDBLite consensus disorder prediction 1 48 - -
Phco1g00016 634 MobiDBLite consensus disorder prediction 603 634 - -
Phco1g00016 634 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 77 603 IPR045168 -
Phco1g00016 634 MobiDBLite consensus disorder prediction 219 254 - -
Phco1g00016 634 MobiDBLite consensus disorder prediction 28 47 - -
Phco1g00016 634 FunFam YTH domain family 1, isoform CRA_a 367 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00016 Phco-Chr1 203717 215348 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00016 1 203717 215348 Phco1g00016 1 203717 215348 ECH