Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00015 ATGAAATGTGTACGCTATATGGCTACAAGATTGACGGGTGCTGAAGGCCCAAGCTACACAGTAGATGATGCTCTAGTGGCTTTGGGTTTTGGAAATTTCCAAATTCTGGTGCTTGTTTATGCTGGTGTTGGTTGGGTTTCAGAAGCAATGGAAATGATGCTACTCTCTTTTGTAGGCCCTGCAGTTCAAGCTGAATGGAATCTTTCCGCTCATGAAGAAAGTTTTATAACCAGTGTGGTTTTCGCAGGCATGCTAATAGGGGCATACTCATGGGGCATTGTTTCTGATAAACATGGAAGGAGGAAAGGATTCCTTATCACAGCGACAGTTACAGCCATAGCTGGTTTTCTTAGTGCATTTGCTCCTAACTATATATTATTACTTGCCCTTCGTTCTCTGGTCGGTATTGGTTTGGGAGGTGGCCCTGTATTATCATCTTGGTTTCTAGAGTTTGTTCCTGCTCCCAACAGAGGTACCTGGATGGTTATCTTTTCAGCATTTTGGACTCTTGGTACCATTTTTGAGGCCTCACTTGCATGGATTGTGATGCCAAATCTGGGTTGGAGATGGCTTCTTGGTCTGTCTTCTCTTCCCACCTCTTTCCTTCTTCTGTTCTACAAACTGACTCCTGAATCACCAAGATACCTATGCTTGAAAGGAAGAACAGCTGATGCAATTGAAGTTTTGGAAAAAATAGCAAGATTAAATGGAAGAGAACTTCCTTCCGGTAACCTTGTTTCTGACCATGAAATTGAGCTACAACAAATTGATAACCCTTCAGAAGACGCACACTTGCTATCAACGACAACAAAAGAAATTGAGCATCCTTTAGGAATGGATTCCAATTTAGGTGGTATCTCATCATTGATGGTGCTTCTCTCACCAAAGTTGGCAAGGTCAACAGTTCTATTATGGGCTGTGTTCTTTGGTAATGCCTTTTCGTATTATGGCCTTGTTTTGTTGACAACTGAGCTGAACGGACATAGTAAATGCATGTCACATAAATTGCAGACAGAGAAGTCCCAGGATGTTAGCTACAAGAGTGTTTTTATTGCTAGTTTTGCAGAGCTACCTGGACTCCTCTTGTCAGCTGTGGCAGTCGACAAACTCGGTCGTAAACTATCAATGTCATCCATGTTCTTCATGTGCTGCATTTTTCTTCTCCCGTTAGTATTCTATCTGCCTGAAGGCTTAACAACGGGCCTTTTATTTCTAGCTCGCATTTGCATCACAGCAACCTTCACAATTGTGTATATATATGCACCAGAGATGTACCCAACATCAGTTAGAACAACTGGTGTGGGAATTGCAAGTTCGGTGGGCAGAATTGGTGGAATGATATGCCCTCTGGTTGCTGTGGGTTTAGTACATGGATGTCATCAAACTGCAGCTGTCCTTCTGTTTGAGATAATAGCTCTTCTTTCAGGAATATGTGTCATGTTCTTACCGATTGAGACCATGGGCCAAGAACTGCGAGATAGTGTGCAAGTCTAA 1494 0.4257 MKCVRYMATRLTGAEGPSYTVDDALVALGFGNFQILVLVYAGVGWVSEAMEMMLLSFVGPAVQAEWNLSAHEESFITSVVFAGMLIGAYSWGIVSDKHGRRKGFLITATVTAIAGFLSAFAPNYILLLALRSLVGIGLGGGPVLSSWFLEFVPAPNRGTWMVIFSAFWTLGTIFEASLAWIVMPNLGWRWLLGLSSLPTSFLLLFYKLTPESPRYLCLKGRTADAIEVLEKIARLNGRELPSGNLVSDHEIELQQIDNPSEDAHLLSTTTKEIEHPLGMDSNLGGISSLMVLLSPKLARSTVLLWAVFFGNAFSYYGLVLLTTELNGHSKCMSHKLQTEKSQDVSYKSVFIASFAELPGLLLSAVAVDKLGRKLSMSSMFFMCCIFLLPLVFYLPEGLTTGLLFLARICITATFTIVYIYAPEMYPTSVRTTGVGIASSVGRIGGMICPLVAVGLVHGCHQTAAVLLFEIIALLSGICVMFLPIETMGQELRDSVQV 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00015 497 ProSitePatterns Sugar transport proteins signature 1. 363 378 IPR005829 GO:0016020|GO:0022857|GO:0055085
Phco1g00015 497 SUPERFAMILY MFS general substrate transporter 23 492 IPR036259 -
Phco1g00015 497 FunFam Organic cation/carnitine transporter 7 32 488 - -
Phco1g00015 497 Pfam Sugar (and other) transporter 360 492 IPR005828 GO:0016020|GO:0022857|GO:0055085
Phco1g00015 497 Pfam Sugar (and other) transporter 70 245 IPR005828 GO:0016020|GO:0022857|GO:0055085
Phco1g00015 497 Gene3D MFS general substrate transporter like domains 31 496 IPR036259 -
Phco1g00015 497 PANTHER SYNAPTIC VESICLE GLYCOPROTEIN 2 15 489 - -
Phco1g00015 497 ProSiteProfiles Major facilitator superfamily (MFS) profile. 37 487 IPR020846 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00015 Phco-Chr1 197572 202157 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00015 1 197572 202157 Phco1g00015 1 197572 202157 ECH