Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g02056 ATGTTTCCCGATCAAGAATCATCACCAAGATTAGTTTCTCAAAAATCATCTCCAGTAATTCAAGAAGAAGAAGAATTTGCAAGTTGGAATGAGATCTCACAGTTCAGAGAGTGGGTATTGGAAGGAAAATGGAAGGAGGACGTTATTCCTGCATATAGAAAAGACAGTGACTACCACAAAATTATAATCAATGCAAGCAGAGGCACTGCACTGCATGTGGCAGTGAATGATGGGAAAGTGGAGCTTGTTAACATTCTTGTTGAAGCAATCTTGAACCTTGAAGGGAGGGCAGAGCTGAGGGCTGAGAGTGCACTGAAATCAACCAATGAGAGAGGGGACACTCCTTTGCACCTTGCAGCCTCAAGAGGGTTCATTGGCATGTGTAAGTGCATCATAGGAAAAAATGGTGAAAGGAAGGATTTGATTAAGGTTAGGAACAAGAAGGGTGAAACACCTATTTTCAAGGCTGTGCTCACAGGCCAAACAAAGGCCTTTGTGTACCTTCAAGATGTTTCCAAAAATATAGAGGTTTCACTTAGGAACAATCATGGAGACACCATCCTTCACAGTTCCATTTGGAGAGAATTCTTGGATTTGGCAATTATAATAAACGATTGTTATCCTCGACTTGCGTACACACGAAACCAAGGATCTAGTGGAGACACACCTCTCAAAGTTCTTGCTTGCAGACCTTCAGTGTTCAAGAGTGGAAGCAATCTCCCATGGTGGAAGCAAATTCTATATTATTGTATTCATGAAGAAGATCTAGATGTTGAGAAAGCTAAAATATCGTACATGGTTGAAGTTGAAAAAGAAGACAAATATGAACTCAAAGTGAATATAGATTTTGAAAATGAAGGCAAGAAAACACAAATATCTATGGAACAAAAGTATGTCACTTCTGTTCGGTTTGTAAATAGTTTTGTTCGATTTGCATTCAAATGCCTTAGGCTTCCAGGATGGGGTGTCAGTACTGCGCTAGACTTGAAAGCAATAAAGAAGATAAAACAAAAACACATATGGAGTCGTCAGCTCTTGAATAATTTTATGAAAGTACCTTATCTGGACATGGGAATTTATGGAGGTGAACCACTCATGAAATCTGCCAAACCTCTCAAAGAAGGCAGCGACTTGTTCGAATCCTTTATTATCGAAGAGTTAGAAGGGTGGAAAACAACTAGCTCAGGGCAGAGTCAACAAGAAAATACTATAACAGAATCTACAGCAAAAAACGAGGAGAAGGAAACAACATATTTTTCTGTGGCGAAAGCTGACATAGTCGACCTTGTGAATGAGCTTCAAAACAAAGTATCAACTGCCCCGAATGACCGTACCAACCCTAAGAAGGAAAACTTGCGGGTTGTGGCAACGAAGAATAAACTTGGGGAAGACGACGTCGACAAGCAGGAGACTGCAATTTTGACAGCTGCAAAAAATGGCATTATGGAGATTGTGTATGAACTTCAATCCAAAATATCGAGTGCTGTGCATGAAACCAACTCCAAGAACGAAAACGTGTTGCTTGTGGCAGTGAAGAACAGGCAGACCAAAGTTGTTGAGAAGTTGAGGGAGAATTTGAAAAAGGAATTGTTCGATAGCTTAATTTTGGAACTGGATGACAGAGAAAACACTGTGTTGCATTTAGCTGCAGGTACAACTACCAACACTGAAAGGACTTGGCAGATTGCTGGTGCTGCCATGCAAATGATGTGGGATATCAAGTGGTATGAGTACGTGAGCTCTCTAGTGCCGGAACATTTCACATTCAGAAGCAACAAGGACAAAAAAACCAGCGGAGAAATCTTCAAGGAGAAGCACAAAGACATGCTGAAGGAGAGCTCGGAGTGGCTGAAGGAAACCTCAAACTCCTGCTCCGTTGTGGCTGCCCTCATCGCCGGCGTCTCCTTCGCCACCTCCAGCTCCGTCCCCGGAGGCACTGACAAGGGAAAGCCAGAGCTAGAAGGGCAACCGGCTTTCGACACCTTCGCTATCACATCCCTGGTCGGCCTCTGCTTCTCGGTAACCGCCCTGATAATGTTCTTGGCCATCCTTACCTCCCGGAAACAGGCCCAGGACTTCCGGATGAGCTTGCCCTTGAAGCTTCTCTTCGGCCTCAGCTCTCTCTTCGTCTCCATTTCATCCATGCTGGTTTCCTTCTGTGCTGCACATTTCTTCGTGCTCAAGGACAAGTACAAGAACATCTTGTTCCCTATCTACATTGCCACTTGTTTGCCTGTCACTTTCTATGCAGTGTTGCAGTTTCCTCTCTATGTTGATCTGCTTAAAGCCATTTTCAACAAGGTCCCACGACAAAGTAATAGCAGCGAAATCTAG 2334 0.4327 MFPDQESSPRLVSQKSSPVIQEEEEFASWNEISQFREWVLEGKWKEDVIPAYRKDSDYHKIIINASRGTALHVAVNDGKVELVNILVEAILNLEGRAELRAESALKSTNERGDTPLHLAASRGFIGMCKCIIGKNGERKDLIKVRNKKGETPIFKAVLTGQTKAFVYLQDVSKNIEVSLRNNHGDTILHSSIWREFLDLAIIINDCYPRLAYTRNQGSSGDTPLKVLACRPSVFKSGSNLPWWKQILYYCIHEEDLDVEKAKISYMVEVEKEDKYELKVNIDFENEGKKTQISMEQKYVTSVRFVNSFVRFAFKCLRLPGWGVSTALDLKAIKKIKQKHIWSRQLLNNFMKVPYLDMGIYGGEPLMKSAKPLKEGSDLFESFIIEELEGWKTTSSGQSQQENTITESTAKNEEKETTYFSVAKADIVDLVNELQNKVSTAPNDRTNPKKENLRVVATKNKLGEDDVDKQETAILTAAKNGIMEIVYELQSKISSAVHETNSKNENVLLVAVKNRQTKVVEKLRENLKKELFDSLILELDDRENTVLHLAAGTTTNTERTWQIAGAAMQMMWDIKWYEYVSSLVPEHFTFRSNKDKKTSGEIFKEKHKDMLKESSEWLKETSNSCSVVAALIAGVSFATSSSVPGGTDKGKPELEGQPAFDTFAITSLVGLCFSVTALIMFLAILTSRKQAQDFRMSLPLKLLFGLSSLFVSISSMLVSFCAAHFFVLKDKYKNILFPIYIATCLPVTFYAVLQFPLYVDLLKAIFNKVPRQSNSSEI 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g02056 777 SMART ANK_2a 468 498 IPR002110 GO:0005515
Phco11g02056 777 SMART ANK_2a 502 532 IPR002110 GO:0005515
Phco11g02056 777 SMART ANK_2a 148 177 IPR002110 GO:0005515
Phco11g02056 777 SMART ANK_2a 111 140 IPR002110 GO:0005515
Phco11g02056 777 SMART ANK_2a 66 95 IPR002110 GO:0005515
Phco11g02056 777 SMART ANK_2a 183 212 IPR002110 GO:0005515
Phco11g02056 777 Gene3D - 51 274 IPR036770 -
Phco11g02056 777 ProSiteProfiles Ankyrin repeat profile. 66 98 IPR002110 GO:0005515
Phco11g02056 777 PANTHER CASKIN 64 766 - -
Phco11g02056 777 SUPERFAMILY Ankyrin repeat 63 550 IPR036770 -
Phco11g02056 777 Gene3D - 383 625 IPR036770 -
Phco11g02056 777 Pfam Ankyrin repeats (many copies) 68 130 IPR002110 GO:0005515
Phco11g02056 777 Pfam Domain of unknown function 615 725 IPR026961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g02056 Phco-Chr11 17051027 17062160 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g02056 11 17051027 17062160 Phco11g02056 11 17051027 17062160 ECH