Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g02027 ATGGGTTGCAGAAACAGGGACTCCTTAGCAGATAATCATTCTTCACCTTCTTCTGACTCGCTCAGCGAGGCCTTGCTTTTCACCACCATGTGCATTGTGGGTCTCCCTGTGGATGTTCATGTCAAGGATGGCTCTGTGTATTCTGGAATCTTCCACACTACTTCTGCTCACGCCGATTATGGTATTGTTTTGAAGAAAGCAAGGATGACCAAGAAGGGAAAAGGCAACACCAATGTTGGAAATGAGGGTTTTGTGGATACACTGGTGATTCTATCCAGTGATCTTGTGCAAGTTGTTGCTAAGGGAGTAATGCTTCCTGCAGATCGTGTTGGTGAAAACATAACTGGTGATGATGAAGAAGCAGTTGCACATAATGTATCTCCTGAGAGTCTAACGTGTGAGGTAGAGAATCATACAAAGCCCTTGATGGATGCAAAACAAGTTAATCAGTCAAGACAAGTCGAAGATGACAAGTCAAACTTAAAAGGGAAAGCTGATGATCACGGGCAGAAGTCTGAGGTTTTTAATGGAAAAAGTGATGAAAAGATTCAAAGCCTCAATTCAGGACATGAAAGCCAACAGGTAGCTGTTGAGCATGGAGGCACAGACAAGACATCAAATCCACCCAATAACGGATTATTCTGCGATAGTGCTCTAACATCTGTTAAAGCCAATGATAGTGAAAGGTCTGCTTCAGCAGAGTCTATCTCTACAAATTCAACCCAAGGTGTGGATCTCATCACAGAGTCACATCCAGCAAGGTCCATTAAAATATCTGCTCTAAGGAGTACAGATTCTACCAGAAATACTAAGGAATTTAAGCTCAATCCAGCTGCCAAAACCTTCTCTCCATCCTTTGTGAATCCTATATCATCAGCTTCTGTGGCAAATTTGTTATACATACAAAATAGCTCTCCTGTGGTACCTGTTGCTAGTATTCAACCAGAAGTTGGATTCAACACTTTTGCCTCTCGGCCTTCGGTGCCAGTAAAGGTTGCACAGTATAGTAATTTGACAATGGGAAATGGTGGAAGTGGCTCTCAGTTTTCACAACCTATTATTGCACATGTGCCACATAGAAACCAACCCCTCCGGTTTCCTACACATTACACTCCTGTTTTGTCTGAACCTGCTTATATGCAACCAAGCTCTCCTGCTGTAATGGTTGGACGTTCCCCCCAGTTAGTATATGTTCAGCCACTTTCCCATGATTTAATTCATGGAACAACGGCCGTTGCACCCGTCTCGGCTCGCCCTCTGTTGAATCATCATGTACCATTTCCAAAGCAGCAAGGAGGAACAATGGGTCCAGCAATGCCAGTTTGTGTGCCCCCTCCTGTCCTAACAAGTGGACATCAGCCCTTTGCACTTCAAGGCCACATTCCACTTCTGCAACCTGGCTTTCCTGTCACTCGACCTATTTCAGTCCCAGGACCAAATGGTTTCTATGGCACTAAATTTTAG 1464 0.4413 MGCRNRDSLADNHSSPSSDSLSEALLFTTMCIVGLPVDVHVKDGSVYSGIFHTTSAHADYGIVLKKARMTKKGKGNTNVGNEGFVDTLVILSSDLVQVVAKGVMLPADRVGENITGDDEEAVAHNVSPESLTCEVENHTKPLMDAKQVNQSRQVEDDKSNLKGKADDHGQKSEVFNGKSDEKIQSLNSGHESQQVAVEHGGTDKTSNPPNNGLFCDSALTSVKANDSERSASAESISTNSTQGVDLITESHPARSIKISALRSTDSTRNTKEFKLNPAAKTFSPSFVNPISSASVANLLYIQNSSPVVPVASIQPEVGFNTFASRPSVPVKVAQYSNLTMGNGGSGSQFSQPIIAHVPHRNQPLRFPTHYTPVLSEPAYMQPSSPAVMVGRSPQLVYVQPLSHDLIHGTTAVAPVSARPLLNHHVPFPKQQGGTMGPAMPVCVPPPVLTSGHQPFALQGHIPLLQPGFPVTRPISVPGPNGFYGTKF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g02027 487 Pfam Ataxin 2 SM domain 23 101 IPR025852 -
Phco11g02027 487 MobiDBLite consensus disorder prediction 150 178 - -
Phco11g02027 487 MobiDBLite consensus disorder prediction 179 216 - -
Phco11g02027 487 MobiDBLite consensus disorder prediction 145 216 - -
Phco11g02027 487 PANTHER ATAXIN 2-RELATED 135 438 IPR045117 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g02027 Phco-Chr11 16666563 16673157 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g02027 11 16666563 16673157 Phco11g02027 11 16666563 16673157 ECH