Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01963 ATGCTTCCTCAGGGCATCAAGAAAGCCATCACTGACAACCCTAAGAAGCTTGCCAACTTGATTGACCTCGTCAACCTTCCATCCACGCTCAGAGAATTCGTGGGTCAGTCTCAGATTTCCCGTTTGGGCTGTTTCATGTGCGTTTGGTCCTACATCAAAACCAAAAATCTGCAGGATCCGTACAACAAGAATGTGATCAACTGTGATGATAAATTAAAAAGTATTTTGTTGGGGAAACCTCAGGTTGAGTTAGCAGAACTTCCTGCACTAATCAAGATGCATTTTCCAAAAGAGCCCAAATGA 303 0.4323 MLPQGIKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFMCVWSYIKTKNLQDPYNKNVINCDDKLKSILLGKPQVELAELPALIKMHFPKEPK 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01963 100 SUPERFAMILY SWIB/MDM2 domain 16 97 IPR036885 -
Phco11g01963 100 CDD SWIB-MDM2_like 24 95 - -
Phco11g01963 100 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 13 100 - -
Phco11g01963 100 Pfam SWIB/MDM2 domain 24 95 IPR003121 -
Phco11g01963 100 ProSiteProfiles SWIB/MDM2 domain profile. 19 97 IPR003121 -
Phco11g01963 100 Gene3D SWIB/MDM2 domain 16 100 IPR036885 -
Phco11g01963 100 SMART swib_2 20 100 IPR019835 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Phco11g01963 SWIB 7.1e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01963 11 15959610 15960921 Phco11g01963 11 15959610 15960921 ECH