Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01938 ATGAGTTTCGTGCCAAAGGAGACAATCGAAGTCATCGCACAGAGCATAGGCATCACCAATTTGTCCCCCGATGTTGCCCTCGCTCTCGCCCCGGATCTCGAATATCGCATTCGCGAAATCATGCAGGAGTCGATAAAATGCATGCGCCATTCGATGAGAACCTTTCTTAGTACAGAGGACGTGGATACTGCACTTGCATTGAGAAATTTGGAGCCTATATATGGGTTCAATTCTAATGATCCTCCGAGGTTCAAAAGAGCTGCTGGACATAAGGATCTGTTCTACATTGATGACAAAGATGTGGATATCAAAGATCTTATTGAAGCTCCTTTACCGAAAACACCCCTTGATACATCAATTACCAGTCACTGGTTGGCTATTGAAGGCGTGCAACCTGCAATTCCTGAAAATGCTCCAGTTGACGCTCCCTCTGAAATAAGAAAATCTGAGTATAAGGAAGATGGGCTTTCTGTTGATAAATTACCTGTTAAACATTTAATAACAAGGGAGCTTCAGCTCTACTATGAGAAAATAACTGATCTAACATTGAATAAGTCTGGATCCATTCCGTTCAGAAGAGCATTGGTTAGCTTGGCAACGGACTCAGGACTCCATCCCTTAGTTCCGTATTTCACATGCTTTATTGCTGATGAGGTGGCACGTAATTTACATAATTTATCTCTTCTATTTGCCTTGATGCGCCTAGTGCGGAGCCTTGTGCAAAATTCTCAGATACACATAGAACTTTATTTACATCAATTGATGCCGCCTATCATTACTTGCATTGTTGCAAAAAAGATAGGAAACAGACTATCTGACGATCACTGGGAGCTTAGGAACTTCAGTGCTAATCTTGTTGCTTCAATATGCCACAGATTTGGGCATATTTATCACAATCTGCAGCCACGCGTGACAAAGACACTTCTACATTCTTTCTTGGACCCTTCAAAAGCTCTGCCTCAACACTATGGTGCAATTAAAGGGATAGAAGCTCTTGGATCAAGACTGATTCACTTGCTTATACTTCCAAATCTCGAGCCATATTTGCATCTTCTTGAGCCAGAAATGCAACCTGAGAAACAAAAAAATGAAATGAAGAGGCATGAGGCTTGGCAGGTTTATGGAGCTTTGTTGGGTGCAGTAGGACAATGTGTGCATGAAAAGGTCAAAATGTTCAGCAATTTGTTATGTCCTCCAACTCGGGTTACTTCGAGAGGCAGTGGTAAAGCCATTATTCCAATGTCAGGCAAACGAAAAGCCAGTGCCGACAATCTGATGCAGCAGCAACCTCCAATGAAGAAACTTTCTACAGATGGGCATGGAGGTGTAATACCAATGAACTCCATGTCAGTTGACATGCCAGGCTCAACAGGGGGATTTTCCACCATGATGGGGGCTCCTACTATGTCGATGACTCGTCAAATTTCGACTGACAACGTGACAGGGAGGGAGGTTGTAGATCAACAAAGGAAGGTGTCTGCCACTCTTGCTCAGGCTTGGAAGGATGACATTGATGCAGGAAATTTGGTGTCATCAGTGGTTGAATTGTTTGGCGAAAGGGTGTTACCATTTGTCCCTAACCCTGAAGCATTTATGTTTTTGTAG 1605 0.4312 MSFVPKETIEVIAQSIGITNLSPDVALALAPDLEYRIREIMQESIKCMRHSMRTFLSTEDVDTALALRNLEPIYGFNSNDPPRFKRAAGHKDLFYIDDKDVDIKDLIEAPLPKTPLDTSITSHWLAIEGVQPAIPENAPVDAPSEIRKSEYKEDGLSVDKLPVKHLITRELQLYYEKITDLTLNKSGSIPFRRALVSLATDSGLHPLVPYFTCFIADEVARNLHNLSLLFALMRLVRSLVQNSQIHIELYLHQLMPPIITCIVAKKIGNRLSDDHWELRNFSANLVASICHRFGHIYHNLQPRVTKTLLHSFLDPSKALPQHYGAIKGIEALGSRLIHLLILPNLEPYLHLLEPEMQPEKQKNEMKRHEAWQVYGALLGAVGQCVHEKVKMFSNLLCPPTRVTSRGSGKAIIPMSGKRKASADNLMQQQPPMKKLSTDGHGGVIPMNSMSVDMPGSTGGFSTMMGAPTMSMTRQISTDNVTGREVVDQQRKVSATLAQAWKDDIDAGNLVSSVVELFGERVLPFVPNPEAFMFL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01938 534 SMART TAF_cls 2 68 IPR004823 -
Phco11g01938 534 Pfam TATA box binding protein associated factor (TAF) 1 65 IPR004823 -
Phco11g01938 534 FunFam transcription initiation factor TFIID subunit 6 163 368 - -
Phco11g01938 534 SUPERFAMILY ARM repeat 225 391 IPR016024 -
Phco11g01938 534 FunFam transcription initiation factor TFIID subunit 6 1 66 - -
Phco11g01938 534 CDD TAF6C 164 380 IPR011442 GO:0006367
Phco11g01938 534 Gene3D Histone, subunit A 1 66 IPR009072 GO:0046982
Phco11g01938 534 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 2 530 IPR037796 GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695
Phco11g01938 534 Pfam TAF6 C-terminal HEAT repeat domain 258 345 IPR011442 GO:0006367
Phco11g01938 534 SUPERFAMILY Histone-fold 1 65 IPR009072 GO:0046982
Phco11g01938 534 Gene3D - 163 368 IPR046344 GO:0006367
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01938 Phco-Chr11 15799682 15804915 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01938 11 15799682 15804915 Phco11g01938 11 15799682 15804915 ECH