LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco11g01928	ATGGTGACAGAGGAACAAATATCGGAAGCGGTATCGTCGCTGCTGCGCGAATCTAACCCTAGCCAGCGTAGCTTCACGACGCTGAACCAGGTGGTGGAGGAGCTTCAGGCCAAGCTCGGCCACGACCTCTCTCACAAGCTCGATTTCATCACCGCGCAGATCAACCTCCTGTTCGGATCCCAACCACAACCACCACAACCTCCGCCGCAAAATGCGCAGAGGCAGATACAAGAGCCGAAAGACCATTTTGCCCCTCCACCAAACCCTAATTTCCACTCTGTTCCTGTCAGTTCCGGCTTCCAGGCTCCCAAATCCCCTTCTTCTAACGCTGTCGTCGCCACTGCTGCTGATATTTCGCGTGCTGAAGCTCCTGCTCCTGCTCCTGCTCCTGTTAACGATGTTCCGAAGGAAAGTACTCAAACAAAGGCGAAGAGAAGAGGTGGCCCAGGAGGTCTCACCAAACTTTGTGGTGTATCGCCTGAACTTCAGGTCATTGTTGGCCAGCCAGCACTCTCGAGGACTGAGATTGTCAAGCAACTGTGGGCTTACATAAGGAAAAACAATCTTCAAGATCCCAGCAACAAAAGGAAAATAATTTGCAATGAAGAGCTGCGTGTGGTGTTTGAGACAGATTGTACTGATATGTTCAAGATGAACAAGTTGCTAGCTAAACACATTATCCCCCTTGAACCAACCAAAAAGCCTGTTCCAAAAAAGCAGAAGGTAGATGTGGACTCAGGAAAAAGAATTGCTGAACCTACTCCTTCTGTAATAATATCTGATGCACTCGCTAACTTTTTTGGCATTACTGAAAGGGAGATGCTACAGTCTGAGGTTCTGAGACGTATCTGGGAGTACATAAAAGTCAATCAGCTAGAGGATCCTATGAATCCTATGGCAATACTGTGTGATGCGAAGCTTCAGGAGATCTTTGGCTGTGAAAGCATTTCAGCATTGGGGATACCTGAAGTTCTGGGCCGTCATCATATTTTTAGGAGTTGA	1002	0.481	MVTEEQISEAVSSLLRESNPSQRSFTTLNQVVEELQAKLGHDLSHKLDFITAQINLLFGSQPQPPQPPPQNAQRQIQEPKDHFAPPPNPNFHSVPVSSGFQAPKSPSSNAVVATAADISRAEAPAPAPAPVNDVPKESTQTKAKRRGGPGGLTKLCGVSPELQVIVGQPALSRTEIVKQLWAYIRKNNLQDPSNKRKIICNEELRVVFETDCTDMFKMNKLLAKHIIPLEPTKKPVPKKQKVDVDSGKRIAEPTPSVIISDALANFFGITEREMLQSEVLRRIWEYIKVNQLEDPMNPMAILCDAKLQEIFGCESISALGIPEVLGRHHIFRS	333

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco11g01928	333	MobiDBLite	consensus disorder prediction	93	114	-	-
	Phco11g01928	333	SUPERFAMILY	SWIB/MDM2 domain	252	329	IPR036885	-
	Phco11g01928	333	Gene3D	-	1	58	-	-
	Phco11g01928	333	ProSiteProfiles	DEK C-terminal (DEK-C) domain profile.	1	59	IPR014876	-
	Phco11g01928	333	Pfam	DEK C terminal domain	2	58	IPR014876	-
	Phco11g01928	333	MobiDBLite	consensus disorder prediction	1	21	-	-
	Phco11g01928	333	SMART	swib_2	152	231	IPR019835	-
	Phco11g01928	333	SMART	swib_2	253	333	IPR019835	-
	Phco11g01928	333	CDD	SWIB-MDM2_like	257	328	-	-
	Phco11g01928	333	PANTHER	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	238	328	-	-
	Phco11g01928	333	ProSiteProfiles	SWIB/MDM2 domain profile.	151	228	IPR003121	-
	Phco11g01928	333	CDD	SWIB-MDM2_like	156	226	-	-
	Phco11g01928	333	Gene3D	SWIB/MDM2 domain	251	332	IPR036885	-
	Phco11g01928	333	Gene3D	SWIB/MDM2 domain	147	235	IPR036885	-
	Phco11g01928	333	MobiDBLite	consensus disorder prediction	58	154	-	-
	Phco11g01928	333	ProSiteProfiles	SWIB/MDM2 domain profile.	252	331	IPR003121	-
	Phco11g01928	333	Pfam	SWIB/MDM2 domain	156	226	IPR003121	-
	Phco11g01928	333	Pfam	SWIB/MDM2 domain	258	328	IPR003121	-
	Phco11g01928	333	SUPERFAMILY	SWIB/MDM2 domain	145	231	IPR036885	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco11g01928	Phco-Chr11	15710214	15713343	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SWI/SNF-BAF60b	Phco11g01928		SWIB	3e-20	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco11g01928	11	15710214	15713343	Phco11g01928	11	15710214	15713343	ECH