Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01879 ATGGCGGTTTCTTCTCTCTCTGTTACTCCTCTTTCTCTCTCCAATTCTTCTCCCTCTCTATCTTCCAAGCTAAAGTATCCATCTTTGTGCCTTTTCTCGGGTAACTCCTCGAGGCTCACATGCCCCAAACCTCTGCACTCATCAACTGTGGTTCATGTTGCTCCGGAAGTGTTGGATTCTTCCCCTGATCCCTTGGACCCACCTCCAGAAACCCTTGATGATGACTCTGAATCCACCACTTATCAGGTTGGTGACCTGGGGACTCCGAGCACTTCGGCAATTAGCATTGGCGCTGATGCAGATGCAATGGCACCAAAGCAGAAGATTAGAATCAAGCTTAGATCTTACTGGGTGCCCTTGATAGAGGATTCCTGCAAGCAAATATTAGATGCAGCTAGAACTACCAATGCAAAAACGATGGGACCTGTGCCATTGCCAACCAAGAGGCGAGTCTACTGTGTTCTTAAATCCCCTCACGTACACAAGGATGCCCGGTTCCATTTCGAGATCAGAACTCACCAGCGTCTCATTGATATTATGTATCCTACTGCTCAAACAATAGATTCTCTGATGCAACTAGATCTTCCTGCTGGTGTTGATGTGGAGGTGAAGCTCTAG 618 0.4741 MAVSSLSVTPLSLSNSSPSLSSKLKYPSLCLFSGNSSRLTCPKPLHSSTVVHVAPEVLDSSPDPLDPPPETLDDDSESTTYQVGDLGTPSTSAISIGADADAMAPKQKIRIKLRSYWVPLIEDSCKQILDAARTTNAKTMGPVPLPTKRRVYCVLKSPHVHKDARFHFEIRTHQRLIDIMYPTAQTIDSLMQLDLPAGVDVEVKL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01879 205 Pfam Ribosomal protein S10p/S20e 110 204 IPR027486 -
Phco11g01879 205 SUPERFAMILY Ribosomal protein S10 108 205 IPR036838 -
Phco11g01879 205 Gene3D Ribosomal protein S10 domain 97 205 IPR036838 -
Phco11g01879 205 NCBIfam 30S ribosomal protein S10 107 204 IPR001848 GO:0003735|GO:0005840|GO:0006412
Phco11g01879 205 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 34 205 IPR001848 GO:0003735|GO:0005840|GO:0006412
Phco11g01879 205 MobiDBLite consensus disorder prediction 1 23 - -
Phco11g01879 205 PRINTS Ribosomal protein S10 family signature 164 178 IPR001848 GO:0003735|GO:0005840|GO:0006412
Phco11g01879 205 PRINTS Ribosomal protein S10 family signature 108 121 IPR001848 GO:0003735|GO:0005840|GO:0006412
Phco11g01879 205 PRINTS Ribosomal protein S10 family signature 143 158 IPR001848 GO:0003735|GO:0005840|GO:0006412
Phco11g01879 205 Hamap 30S ribosomal protein S10 [rpsJ]. 106 205 IPR001848 GO:0003735|GO:0005840|GO:0006412
Phco11g01879 205 ProSitePatterns Ribosomal protein S10 signature. 132 147 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Phco11g01879 205 SMART Ribosomal_S10_2 110 204 IPR027486 -
Phco11g01879 205 MobiDBLite consensus disorder prediction 57 84 - -
Phco11g01879 205 FunFam 30S ribosomal protein S10 103 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01879 Phco-Chr11 15112553 15114213 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01879 11 15112553 15114213 Phco11g01879 11 15112553 15114213 ECH